View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_24 (Length: 321)
Name: NF20335_low_24
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39209724 - 39209426
Alignment:
| Q |
1 |
gaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtga |
100 |
Q |
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| T |
39209724 |
gaagaagattggatggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtga |
39209625 |
T |
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| Q |
101 |
ttgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagtgtgtgtgcaccgtccaatgtggagttatcat |
200 |
Q |
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| T |
39209624 |
ttgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgca----gtatgcaccgtccaatgtggagttatcat |
39209529 |
T |
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| Q |
201 |
catcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggtacatgcatgttttacaacataag |
300 |
Q |
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| T |
39209528 |
catcacctatgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacattgcgagcaatgtatggtacatgcatgttttacaacataag |
39209429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27514142 - 27514452
Alignment:
| Q |
1 |
gaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacct----------ttatg |
90 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
27514142 |
gaagaagatcggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacttaggtttggatttatg |
27514241 |
T |
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| Q |
91 |
ttggtggtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtca-cctcttgtgcagtgtgtgtgcaccgtccaatgt |
189 |
Q |
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| T |
27514242 |
ttggtgatgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcagcaattggtcaacctcttgtgcagtgt----gcaccgtccaatgt |
27514337 |
T |
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| Q |
190 |
ggagttatcatcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatgg-tacatgcatgtt |
288 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |
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| T |
27514338 |
ggagttatcatcatgacccctgagcataaacaacgtgatgcagcaggtttgaaatttccattctccaacatggcgagcaatgtatggttacatgcaagtt |
27514437 |
T |
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| Q |
289 |
ttacaacataagggt |
303 |
Q |
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||||||||||||||| |
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| T |
27514438 |
ttacaacataagggt |
27514452 |
T |
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