View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_27 (Length: 299)
Name: NF20335_low_27
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 27514103 - 27513835
Alignment:
| Q |
1 |
ttgtgaaaccttcccaaaccttttaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacaaagacggaaaccgaaatgaaggaactgctct |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||| |||| |
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| T |
27514103 |
ttgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaatgaaggaaccgctcc |
27514004 |
T |
|
| Q |
101 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgct |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
27514003 |
gtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagtcgaaagctcacgatgct |
27513904 |
T |
|
| Q |
201 |
gttattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggctgttgttgttttga |
271 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27513903 |
actattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
101 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
196 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| || | ||||| |||||||| || ||||| || |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
197 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
247 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39209763 - 39209911
Alignment:
| Q |
1 |
ttgtgaaaccttcccaaaccttttaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacaaagacggaaaccgaaatgaaggaactgctct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39209763 |
ttgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaatgaaggaactgctcc |
39209862 |
T |
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| Q |
101 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
149 |
Q |
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| T |
39209863 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 39209906 - 39210001
Alignment:
| Q |
176 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggctgttgttgttttga |
271 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga |
39210001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 24037194 - 24037019
Alignment:
| Q |
104 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
199 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||| |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
200 |
tgttattgaaagagctatcgagctcggtgaagaggt----tcactctctctcactgaatggctgttgttgttttga |
271 |
Q |
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|| | || |||| ||||||||| ||||||||||||| || |||||||||| ||||| |||||||||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctctctcattgaatcgctgttgttgttttga |
24037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
| Q |
7 |
aaccttcccaaaccttttaattggctttcggtgggaagaggaaccgca |
54 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||| |||| |
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| T |
24037323 |
aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca |
24037276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
| Q |
7 |
aaccttcccaaaccttttaattggctttcggtgggaagaggaa |
49 |
Q |
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| T |
9460971 |
aaccttcccaaaccttctgattggctttcggtgggaacaggaa |
9461013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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