View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_29 (Length: 284)
Name: NF20335_low_29
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 41249645 - 41249399
Alignment:
| Q |
21 |
taggtacatatatacaagaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagcaaccacgttgt |
120 |
Q |
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| T |
41249645 |
taggtacatatatacaagaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagaaaccacgttgt |
41249546 |
T |
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| Q |
121 |
gaacagaggttggggagcatctattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249545 |
gaacagaggttggggagcatctattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgata |
41249446 |
T |
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| Q |
221 |
tatttaatttggtctaacaataacaagtttgtttgtgttcctgtatcatttc |
272 |
Q |
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| T |
41249445 |
t-----atttggtctaacaataacaagtttgtttgtgttcctgtatcatttc |
41249399 |
T |
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