View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20335_low_30 (Length: 279)
Name: NF20335_low_30
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_30 |
 | |
|
| [»] chr7 (13 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4711707 - 4711985
Alignment:
| Q |
1 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711707 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
4711806 |
T |
|
| Q |
101 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711807 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
4711906 |
T |
|
| Q |
201 |
acctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattcc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711907 |
acctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattcc |
4711985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 4673162 - 4672931
Alignment:
| Q |
2 |
atgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaag |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
4673162 |
atgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacggaataccaaattcataacgaaaaag |
4673063 |
T |
|
| Q |
102 |
ctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttta |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
4673062 |
ctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtgacgatactggtatgtttcgtaattgggacaatgattttcatggtta |
4672963 |
T |
|
| Q |
202 |
cctggaaaaagaatatccacaaagtgtatcaa |
233 |
Q |
| |
|
| |||| ||| ||||||||| |||||||||| |
|
|
| T |
4672962 |
cttggagaaacaatatccacttagtgtatcaa |
4672931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 4845648 - 4845925
Alignment:
| Q |
2 |
atgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaag |
101 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||| || ||| |||| | ||| ||||||||||| |||||| |||||| ||| || |||| |
|
|
| T |
4845648 |
atgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatacgaaattcgtaatgataaag |
4845747 |
T |
|
| Q |
102 |
ctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttta |
201 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||| |||||||||||| ||||| | ||||||||||||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
4845748 |
ctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgtta |
4845847 |
T |
|
| Q |
202 |
cctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattcc |
279 |
Q |
| |
|
| |||| ||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4845848 |
cttggagaaagaatatccacttagtgtatcaagtttttatggaagtgatcatctaaactatttaaacaatactattcc |
4845925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 4637316 - 4637105
Alignment:
| Q |
2 |
atgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaag |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| || |||||| || |||||||||||| ||||||||| ||||||| |
|
|
| T |
4637316 |
atgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacacggaataccgaattcataaagacaaag |
4637217 |
T |
|
| Q |
102 |
ctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttta |
201 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
4637216 |
ctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtatgtttcgcaattggggcaatgattttcctcttta |
4637117 |
T |
|
| Q |
202 |
cctggaaaaaga |
213 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
4637116 |
cttggagaaaga |
4637105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 4696826 - 4697049
Alignment:
| Q |
2 |
atgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaag |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||| | ||||| |||||||||||| ||||||| ||| |||||| ||| ||||||||||| |
|
|
| T |
4696826 |
atgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacagggactaccaagttcttaacgacaaag |
4696925 |
T |
|
| Q |
102 |
ctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttta |
201 |
Q |
| |
|
| || || | ||| ||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
4696926 |
cgttagagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggtatgtttcgtaactgggacaatgattttcctcgtta |
4697025 |
T |
|
| Q |
202 |
cctggaaaaagaatatccacaaag |
225 |
Q |
| |
|
| |||| ||| ||||||||||||| |
|
|
| T |
4697026 |
cttggagaaacaatatccacaaag |
4697049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 4644089 - 4643892
Alignment:
| Q |
79 |
ataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaat |
178 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4644089 |
ataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagatacaggtatgtttcgtaat |
4643990 |
T |
|
| Q |
179 |
tgggacagtgattttcctctttacctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattc |
278 |
Q |
| |
|
||||||| ||||| ||||| |||| |||| ||| ||||||| | ||| ||||||| || ||||| | |||||| |||||||||||| ||| |||||| |
|
|
| T |
4643989 |
tgggacaatgattatcctcgttacttggagaaacaatatccgctaagcgtatcaaatgattatgaa---catcatctaaactatttaaaaaatgccattc |
4643893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4864382 - 4864158
Alignment:
| Q |
1 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| | |||||| ||| |||||||||| |
|
|
| T |
4864382 |
tatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactaccaagttcttaacgacaaa |
4864283 |
T |
|
| Q |
101 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
200 |
Q |
| |
|
|| || || | ||| ||||||||||| || ||| ||| |||||||||||| | ||||| |||||||||||||||||||||| ||||||||||| || |
|
|
| T |
4864282 |
gcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatgatactggtatgtttcgtaattgggacaatgattttcctcgtt |
4864183 |
T |
|
| Q |
201 |
acctggaaaaagaatatccacaaag |
225 |
Q |
| |
|
|| |||| ||| ||||||||||||| |
|
|
| T |
4864182 |
acttggagaaacaatatccacaaag |
4864158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4667401 - 4667123
Alignment:
| Q |
1 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||| | ||||||||| || | ||||| || |||||||||||||| || |||||||| |||| |||| ||||| |
|
|
| T |
4667401 |
tatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgacagcaatgaataccatattcctaacaacaaa |
4667302 |
T |
|
| Q |
101 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
200 |
Q |
| |
|
||| |||| | ||| |||||||||| ||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||| ||||||||||| || |
|
|
| T |
4667301 |
gctatggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtgacgatactggtatgtttcgtaattgggacaatgattttcctcgtt |
4667202 |
T |
|
| Q |
201 |
acctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccattcc |
279 |
Q |
| |
|
|| |||| ||| ||||||||||||| |||||| | || |||| ||||||||||||||||||| | ||||| ||||| |
|
|
| T |
4667201 |
acttggagaaacaatatccacaaagcatatcaagttattttggacctgatcatccaaactatttacaaaatactattcc |
4667123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 4631387 - 4631114
Alignment:
| Q |
1 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||| | || |||| ||| || |||||| ||||||| | |||||||| |||| |||| ||||| |
|
|
| T |
4631387 |
tatgccttcttttctctattacactaatctcagtgacacgaactaccatttaaagatacttgattttgacagcggtgaataccagattcttaacaacaaa |
4631288 |
T |
|
| Q |
101 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
200 |
Q |
| |
|
||| |||||| || ||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||| || |
|
|
| T |
4631287 |
gctatggaaacagtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgtttcgcaattgggacaatgattttcctcgtt |
4631188 |
T |
|
| Q |
201 |
acctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactatttaaacaataccatt |
277 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||| | || |||| |||||| |||||||||||||||||||||| |
|
|
| T |
4631187 |
acttggagaaagaatatccacttagtgtatcaagttattttgga---catcatctaaactatttaaacaataccatt |
4631114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 4815965 - 4816111
Alignment:
| Q |
67 |
tgacaacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggt |
166 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4815965 |
tgacaacacggaataccaagttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggc |
4816064 |
T |
|
| Q |
167 |
atgtttcgtaattgggacagtgattttcctctttacctggaaaaaga |
213 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||| |||| ||||| |
|
|
| T |
4816065 |
atgtttcgtaattgggacaatgattctcctcgttacttggagaaaga |
4816111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4783470 - 4783682
Alignment:
| Q |
1 |
tatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | | || ||| | || | || || |||||||||||||| || ||| ||| |||| ||||| |
|
|
| T |
4783470 |
tatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatcaagttcttaactacaaa |
4783569 |
T |
|
| Q |
101 |
gctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctcttt |
200 |
Q |
| |
|
||||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||| || |
|
|
| T |
4783570 |
gctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtaattgggacaatgattctcctcgtt |
4783669 |
T |
|
| Q |
201 |
acctggaaaaaga |
213 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
4783670 |
acttggagaaaga |
4783682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 279
Target Start/End: Complemental strand, 4663294 - 4663176
Alignment:
| Q |
158 |
gatacaggtatgtttcgtaattgggacagtgattttcctctttacctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaa |
257 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||| ||||| |||| |||| | ||||||||||||||||||||||| || || |||| ||||||| || |
|
|
| T |
4663294 |
gatacaggtatgtttcgttattgggaaaatgattctcctcgttacttggagatagaatatccacaaagtgtatcaagtgattttgga---gatcatctaa |
4663198 |
T |
|
| Q |
258 |
actatttaaacaataccattcc |
279 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4663197 |
actatttaaacaataccattcc |
4663176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 4653865 - 4653748
Alignment:
| Q |
116 |
tatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctctttacctggaaaaagaat |
215 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||| | |||| ||||| |||| | || ||| ||| |
|
|
| T |
4653865 |
tatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatactggtttgtttcgtaattgggataacgattatcctcgttacttagagaaacaat |
4653766 |
T |
|
| Q |
216 |
atccacaaagtgtatcaa |
233 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
4653765 |
atccactaagtgtatcaa |
4653748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 18925492 - 18925609
Alignment:
| Q |
116 |
tatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggtatgtttcgtaattgggacagtgattttcctctttacctggaaaaagaat |
215 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| || | || ||||||||||||||| ||||||||| |||||||||| |||| |||| ||| ||| |
|
|
| T |
18925492 |
tatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggtatgtttcgttattgggacaacgattttcctcgttacttggagaaacaat |
18925591 |
T |
|
| Q |
216 |
atccacaaagtgtatcaa |
233 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
18925592 |
atccactaagtgtatcaa |
18925609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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