View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20335_low_4 (Length: 569)
Name: NF20335_low_4
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20335_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 52972859 - 52972320
Alignment:
| Q |
11 |
ccaagaatataactaaggtggtatggtggtatttatctccactcaactcacacacacg--tatatataaagtgtgatgacatattctcatctcataaaaa |
108 |
Q |
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|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
52972859 |
ccaaaaatgtaactaaggtggtatggt---atttatctccactcaactcacacacacacatatatataaagtgtgatgacatattctcatctcatgaaaa |
52972763 |
T |
|
| Q |
109 |
taaaaggaaataagtgatgagtttcatgtcctccttcgaggcatggacgtaacatttccgacnnnnnnntcgtcaatcaatgtctcaatgtcgtcgggat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
52972762 |
taaaaggaaataagtgatgagtttcatgtcctccttcgaggcatggacgtaacatttccaacaaaaaaatcgtcaatcaatgtctcaatgtcgtcgggat |
52972663 |
T |
|
| Q |
209 |
gatactttatgtacttgtcaatatgtcttcctgtttctagatgatgtttaaatcttcccataaaggagcgatacgcaggtatgaccaaggcagatattga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972662 |
gatactttatgtacttgtcaatatgtcttcctgtttctagatgatgtttaaatcttcccataaaggagcgatacgcaggtatgaccaaggcagatattga |
52972563 |
T |
|
| Q |
309 |
aactcttaactctgattgaagttgttcatcgctcaccatccaactactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972562 |
aactcttaactctgattgaagttgttcatcgctcaccatccaactactttgcgtcttgtggatatcttcaaacatggaattgaaacacttaaacctctct |
52972463 |
T |
|
| Q |
409 |
ctcaaaacctgcttagacaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttat |
508 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972462 |
ctcaaaacctgcttagagaccttgttcccttgttgatgaaggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttat |
52972363 |
T |
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| Q |
509 |
ggtggaacttcaaacttgtttgcctcctcctgcaccagttatc |
551 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52972362 |
ggtggaacttcaaacttgtttgcctcctcctacaccagttatc |
52972320 |
T |
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