View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20335_low_9 (Length: 442)

Name: NF20335_low_9
Description: NF20335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20335_low_9
NF20335_low_9
[»] chr4 (2 HSPs)
chr4 (222-434)||(36453181-36453393)
chr4 (9-221)||(36453181-36453393)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 222 - 434
Target Start/End: Original strand, 36453181 - 36453393
Alignment:
Q  222 ttttgagaaaaactctgccgttactattttgtgaaaattacgtaccatttgactttaacaactcgttttcaatttatgaaagatgttagttttatcgtgg 321  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36453181 ttttgagaaaaactctgtcgttactattttgtgaaaattgcgtaccatttgactttaacaactcgttttcaatttatgaaagatgttagttttatcgtgg 36453280  T
Q  322 ttgtgcatttggaaaggttggcttgaagtaattttattagtgttgatgaaaaggaaaaagaaagaatacgtaacaaaactacattctttaacactagtta 421  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36453281 ttgtgcatttggaaaggttggctttaagtaatttcattagcgttgatgaaaaggaaaaataaagaatacgtaacaaaactacattctttaacactagtta 36453380  T
Q  422 cttactctgtgct 434  Q
    |||||||| ||||    
T  36453381 cttactctatgct 36453393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 36453393 - 36453181
Alignment:
Q  9 agcacagagtaagtaactagtgttaaagaatgtagttttgttacgtattctttctttttccttttcatcaacactaataaaattacttcaagccaacctt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  36453393 agcatagagtaagtaactagtgttaaagaatgtagttttgttacgtattctttatttttccttttcatcaacgctaatgaaattacttaaagccaacctt 36453294  T
Q  109 tccaaatgcacaaccacgataaaactaacatctttcataaattgaaaacgagttgttaaagtcaaatggtacgtaattttcacaaaatagtaacggcaga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  36453293 tccaaatgcacaaccacgataaaactaacatctttcataaattgaaaacgagttgttaaagtcaaatggtacgcaattttcacaaaatagtaacgacaga 36453194  T
Q  209 gtttttctcaaaa 221  Q
    |||||||||||||    
T  36453193 gtttttctcaaaa 36453181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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