View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20336_low_4 (Length: 463)
Name: NF20336_low_4
Description: NF20336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20336_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 8060189 - 8059760
Alignment:
| Q |
16 |
ctccattactttatctctatgcttctcatcaaaacttaacacaaacccattctcccccgtttgttttggcttaggcttaatatttaactgatataggatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060189 |
ctccattactttatctctatgcttctcatcaaaacttaacacaaacccattctcccccgtttgttttggcttaggcttaatatttaactgatataggatc |
8060090 |
T |
|
| Q |
116 |
tcatcagcttgcatattgggatttttagaaagatcactgttggttttttgagtaagcatccattaaatcttgatgccttcaaattcatccaccacaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
8060089 |
tcatcagcttgcatattgggatttttagaaagaccactgttggttttttgagtaagcatccatttaatcttgatgccttcaaattcatccaccacagttt |
8059990 |
T |
|
| Q |
216 |
gctttccatcaaaagttacgagtacattgttatgatcggatatttttccaactttgagggatgtgtaagttttggatattctagtagggaaatactcttt |
315 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
8059989 |
actttccatcaaaagctacgagtgcattgttatgatcggatatttttccaactttgagggatgtgtaagttttggatattctagtagggagatactctgt |
8059890 |
T |
|
| Q |
316 |
ggctgcatagaagagattgttgggacttccatcccaatgcgggtcgatttgaagtgagacttgagttttaggttggtaatttgagaagaaagctcgtaac |
415 |
Q |
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||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8059889 |
ggctgcatagaagggatt-ttgggacttccatcccaaagcgggtcgatttgaagtgagacttgatttttaggttggtaatttgagaagaaagctcgtaac |
8059791 |
T |
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| Q |
416 |
tttgaggcaatgaagttttgaagttttaagg |
446 |
Q |
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| T |
8059790 |
tttgaggcaatgaagttttgaagttttaagg |
8059760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 406
Target Start/End: Complemental strand, 8051785 - 8051621
Alignment:
| Q |
242 |
ttgttatgatcggatatttttccaactttgagggatgtgtaagttttggatattctagtagggaaatactctttggctgcatagaagagattgttgggac |
341 |
Q |
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|||||||| | |||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| |||||||||||| |||||| | |||| ||| | || |
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| T |
8051785 |
ttgttatgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtagggatatactctttggcagcatagtaaagatggtttgtac |
8051686 |
T |
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| Q |
342 |
ttccatcccaatgcgggtcgatttgaagtgagacttgagttttaggttggtaatttgagaagaaa |
406 |
Q |
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||||||||||| | | || ||||||||||| ||||| | || |||||||||| || ||||||| |
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| T |
8051685 |
ttccatcccaaaactgatcaatttgaagtgaaacttggttatttggttggtaatctgtgaagaaa |
8051621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 8051995 - 8051946
Alignment:
| Q |
17 |
tccattactttatctctatgcttctcatcaaaacttaacacaaacccatt |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8051995 |
tccattactttatctctatgcttctcatcaaaacttaacacaaacccatt |
8051946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 47547545 - 47547975
Alignment:
| Q |
16 |
ctccattactttatctctatgcttctcatcaaaacttaacacaaacccattctcccccgtttgttttggcttaggcttaatatttaactgatataggatc |
115 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
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| T |
47547545 |
ctccatcactttatatctatgcttctcatcaaaacttaacacaaacccattctcccccgtttattttggcttaggcttaatatataactgatataagatc |
47547644 |
T |
|
| Q |
116 |
tcatcagcttgcatattgggatttttagaaagatcactgttggttttttgagtaagcatccattaaatcttgatgccttcaaattcatccaccacaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
47547645 |
tcatcagcttgcatattgggatttttagaaagaccactgttggttttttgagtaagcatccatttaatcttgatgccttcaaattcatcaaccactggtt |
47547744 |
T |
|
| Q |
216 |
gctttccatcaaaagttacgagtacattgttatgatcggatatttttccaactttgagggatgtgtaagttttggatattctagtagggaaatactcttt |
315 |
Q |
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|||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47547745 |
actttccatcaaaagctacgagtacgttgttatgattagatatttttccaattttgagggatgtgtaagttttggatattctagtagggagatactcttt |
47547844 |
T |
|
| Q |
316 |
ggctgcatagaagagattgttgggacttccatcccaatgcgggtcgatttgaagtgagacttgagttttaggttggtaatttgagaagaaagctcgtaac |
415 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47547845 |
ggctgcatagaagagattgttgggacttccatcccaaagcgggtcgatttgaagtgagacttgatttttaggttggtaatttgagaagaaagctcgtaac |
47547944 |
T |
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| Q |
416 |
tttgaggcaatgaagttttgaagttttaagg |
446 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
47547945 |
tttgaggcaatgaagttttgaagttttaagg |
47547975 |
T |
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