View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20336_low_5 (Length: 354)
Name: NF20336_low_5
Description: NF20336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20336_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 13472308 - 13471968
Alignment:
| Q |
4 |
aagacaacgaggtattcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttaggagacgccatattagttataggtcatattccaa |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
13472308 |
aagacaacgaggcattcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttagaagacgccaaattagttataggtcctattccaa |
13472209 |
T |
|
| Q |
104 |
tcgccagcatgtttcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataggacctataactactatcgcgtctact |
203 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||| |
|
|
| T |
13472208 |
tcaccagcatgtttcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataagacctataactattgtcgcatctact |
13472109 |
T |
|
| Q |
204 |
acttaatgtggagagtagtctgttttggcacattgatctccacaaaaatttgaactgactgatagggtttgaaaatagcaattgtcaatggtttctgggc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
13472108 |
acttaatgtggagagtagtctgttttggcacattgatctccacaaaaatttgaactgactgataggatttgaaaatagcaattgtcaatggtatctgggc |
13472009 |
T |
|
| Q |
304 |
gaactcgttagaagcgcttgaagtatatttgctcacaggtt |
344 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13472008 |
gaactccttagaagcgcttgaagtatatctgctcacaggtt |
13471968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 13468205 - 13467924
Alignment:
| Q |
8 |
caacgaggtattcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttaggagacgccatattagttataggtcatattccaatcgc |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||| || |||||||||| ||| ||||| ||| |
|
|
| T |
13468205 |
caacgagacattcttctttctctggagatcaatgtgccaaaacagactatgctccacattcagaagacgtca-attagttatatgtcctattctgatcat |
13468107 |
T |
|
| Q |
108 |
cagcatgtttcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataggacctataactactatcgcgtctactactt |
207 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||| | | || |||||||| |
|
|
| T |
13468106 |
tgccatgtttcaaggaaacaatgtttgaaaatggaatagacgtggcaatgaaggcccgctatgagaataggacctataacta-tgtggcatctactaccg |
13468008 |
T |
|
| Q |
208 |
aatgtggagagtagtctgttttggcacattgatctccacaaaaatttgaactgactgatagggtttgaaaatagcaattgtcaa |
291 |
Q |
| |
|
||| || || ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13468007 |
aatatgaagcttagtctgttttggcacattgatctccacataaatatgaactgactgatatggtttgaaaatagcaattgtcaa |
13467924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 13468146 - 13468183
Alignment:
| Q |
208 |
aatgtggagagtagtctgttttggcacattgatctcca |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13468146 |
aatgtggagcatagtctgttttggcacattgatctcca |
13468183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University