View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_high_1 (Length: 477)
Name: NF20337_high_1
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 16751448 - 16751006
Alignment:
| Q |
20 |
aaccaatatggagatccatatgattttgaaattttgattttgacaaagggaaataatctaacggttcttccgatgaggtggctggacgtggtggccatga |
119 |
Q |
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| T |
16751448 |
aaccaatatggagatccatatgattttgagattttgattttgacaatgggaaataatctaacggttcttccgatgaggtggctggacgtggtggccatga |
16751349 |
T |
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| Q |
120 |
gttgaaaccaattaagtttgtcatccattgcatccttttgtgtaaaaatccatgttcaatgtgcttcttgtaccaaaagaatgaataaatagttatctaa |
219 |
Q |
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| T |
16751348 |
gttgaaaccaattaagtttgtcatccattgcatccttttgtgtaaaaatccatgttcaatgtgcttcttgtaccaaaagaatgaataaatagttatctaa |
16751249 |
T |
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| Q |
220 |
aagcctagctgtgtctttatgtttcaagtgatgctgcaaatattattcatttatgtcaatatctttgtaccaaaattaccttataaaatattcaccattt |
319 |
Q |
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| T |
16751248 |
aagcctagctgtgtctttatgtttcaagtgatgctgcaaatattattcatttatgtcaatatctttgtaccaaaattaccttataaaatattcaccatct |
16751149 |
T |
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| Q |
320 |
ttgtgcatgtagttgtttggagaacaaacattttgatttagccattatttaacgaatacttacttcttggatgcttaaaaaatatgtctatgtttagtac |
419 |
Q |
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| T |
16751148 |
ttgtgcatgtaattgtttggagaacaaacattttgatttagccattaattaacgaatacttacttcttggatgcttaaaaaatatgtctatgtttagtac |
16751049 |
T |
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| Q |
420 |
aataacatgaaattgttcttaaacatgtagttgtatctcttat |
462 |
Q |
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| T |
16751048 |
aataacatgaaattgttcttaaacatgtagttgtatctcttat |
16751006 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 10982662 - 10982759
Alignment:
| Q |
25 |
atatggagatccatatgattttgaaattttgattttgacaaagggaaataatctaacggttcttcc-gatgaggtggctggacgtggtggccatgagt |
121 |
Q |
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|||||||||| || ||||||| | ||||||||||||| | ||| ||||||||| ||||||| ||| ||| |||||||||| |||||||| |||||| |
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| T |
10982662 |
atatggagatgcaaatgatttccagattttgattttgagagaggaaaataatcttacggttcatcctcatgtggtggctggaagtggtggctatgagt |
10982759 |
T |
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