View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_low_2 (Length: 453)
Name: NF20337_low_2
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 16751426 - 16751006
Alignment:
| Q |
18 |
attttgaaattttgattttgacaaagggaaataatctaacggttcttccgatgaggtggctggacgtggtggccatgagttgaaaccaattaagtttgtc |
117 |
Q |
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| T |
16751426 |
attttgagattttgattttgacaatgggaaataatctaacggttcttccgatgaggtggctggacgtggtggccatgagttgaaaccaattaagtttgtc |
16751327 |
T |
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| Q |
118 |
atccattgcatccttttgtgtaaaaatccatgttcaatgtgcttcttgtaccaaaagaatgaataaatagttatctaaaagcctagctgtgtctttatgt |
217 |
Q |
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| T |
16751326 |
atccattgcatccttttgtgtaaaaatccatgttcaatgtgcttcttgtaccaaaagaatgaataaatagttatctaaaagcctagctgtgtctttatgt |
16751227 |
T |
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| Q |
218 |
ttcaagtgatgctgcaaatattattcatttatgtcaatatctttgtaccaaaattaccttataaaatattcaccatttttgtgcatgtagttgtttggag |
317 |
Q |
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| T |
16751226 |
ttcaagtgatgctgcaaatattattcatttatgtcaatatctttgtaccaaaattaccttataaaatattcaccatctttgtgcatgtaattgtttggag |
16751127 |
T |
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| Q |
318 |
aacaaacattttgatttagccattatttaacgaatacttacttcttggatgcttaaaaaatatgtctatgtttagtacaataacatgaaattgttcttaa |
417 |
Q |
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| T |
16751126 |
aacaaacattttgatttagccattaattaacgaatacttacttcttggatgcttaaaaaatatgtctatgtttagtacaataacatgaaattgttcttaa |
16751027 |
T |
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| Q |
418 |
acatgtagttgtatctcttat |
438 |
Q |
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| T |
16751026 |
acatgtagttgtatctcttat |
16751006 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 10982687 - 10982759
Alignment:
| Q |
26 |
attttgattttgacaaagggaaataatctaacggttcttcc-gatgaggtggctggacgtggtggccatgagt |
97 |
Q |
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| T |
10982687 |
attttgattttgagagaggaaaataatcttacggttcatcctcatgtggtggctggaagtggtggctatgagt |
10982759 |
T |
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