View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_low_3 (Length: 348)
Name: NF20337_low_3
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 52 - 341
Target Start/End: Original strand, 26020706 - 26021000
Alignment:
| Q |
52 |
attgtgacaaacaagtcaatttaactattctctttcacacgcacacacatttttatgtttgacaaaattgtattattatatttcacccttaaattggcta |
151 |
Q |
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| T |
26020706 |
attgtgacaaacaagtcaatttaactattctctttcacgcgcgcacacatttttatgtttgacaaaattgtattattatatttcacacttaaattggcca |
26020805 |
T |
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| Q |
152 |
atgttatgtg-----atattacacaagtacaatttgtgtgtttcctcgtagatggacacgcatcataaacttcgataaaaacatacannnnnnncatgcg |
246 |
Q |
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| T |
26020806 |
atgttaagtgacattatgttacacaaatacaatccgtgtgtttcctcatagatggacacgcatcataaacttcgataaaaacatacatttttttcatgcg |
26020905 |
T |
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| Q |
247 |
atcgttgtgatgcacatgaaattaacatgtagtaatcacatttttgagaggaatattttatttgtaaatttaaaattcatgttcatgcctttgct |
341 |
Q |
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| T |
26020906 |
atcgttgtgatgcacatgaaattaacatgtaggaatcacatttttgagaggaatattttacttgcaaatttaaaattcatgttgatgcttttgct |
26021000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 300
Target Start/End: Complemental strand, 26229380 - 26229113
Alignment:
| Q |
39 |
attggctattacaattgtgacaaacaagtcaatttaactattctctttcacacgcacacacatttttatgtttgacaaaattgtattattatatttcacc |
138 |
Q |
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| T |
26229380 |
attggctaatccaattgtgacaaacaagtcaatttaactattctctttcatga----acacatttttatgtttgataaaattgtattgtcatatttcaca |
26229285 |
T |
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| Q |
139 |
cttaaattggctaatgttatgtg-----atattacacaagtacaatttgtgtgtttcctcgtagatggacacgcatcataaacttcgataaaaacatac- |
232 |
Q |
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| T |
26229284 |
tttaaattggccaatgttatgtgacattatgttacacaagtgcaatccgtgtgtttcctcatagatggacacgcgtcataaactccaataaaaacatact |
26229185 |
T |
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| Q |
233 |
----annnnnnncatgcgatcgttgtgatgcacatgaaattaacatgtagtaatcacatttttgagaggaat |
300 |
Q |
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| T |
26229184 |
tttttttttcttcatgcgatccttgtgatgcatatgaaattaacatgtaggaatcacattttttagaggaat |
26229113 |
T |
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