View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20337_low_4 (Length: 313)
Name: NF20337_low_4
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 29962904 - 29963172
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29962904 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaag |
29963003 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963004 |
ttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
29963103 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
291 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963104 |
cattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
29963172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 30011894 - 30011626
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30011894 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaacttggtcaag |
30011795 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011794 |
ttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
30011695 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
291 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30011694 |
cattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
30011626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 30005651 - 30005910
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
30005651 |
ataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30005750 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
| |
|
||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||| | || |
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| T |
30005751 |
ttccaactattatcatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcgtttttgcaagtcgaccaaaggttcaaggatcagatct |
30005850 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgt |
282 |
Q |
| |
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||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30005851 |
catgtcttatggttccaaagggatggctttttctgagtatggtccttattggcgtagtgt |
30005910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 29999213 - 29999466
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
29999213 |
ataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttacaacttggtcaag |
29999312 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||| || || |||| ||||| ||| |||| |
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|
| T |
29999313 |
ttccaacaattgttatttcatcttcaaaaggagcagaatcattcctcaaaacccatgacatcgttttcgcaagccgaccgaagattcaaggatcagagct |
29999412 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcg |
276 |
Q |
| |
|
||| | |||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29999413 |
catgtcctatggttctaaagggttgcctttttctgagtatggtccttattggcg |
29999466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 30071333 - 30071074
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
30071333 |
ataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30071234 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
| |
|
||||||| ||| | ||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| || ||||||| ||||| |||| |||| |
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| T |
30071233 |
ttccaactattatcatttcatcttcaaaagctgcagaatcatttctcaaaacccatgacatcgtttttgcaagccgaccaaagagtcaaggatctgagct |
30071134 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgt |
282 |
Q |
| |
|
||| || |||||||| |||||| | | ||||||||| ||||||||||||||||||||||| |
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|
| T |
30071133 |
catgttatatggttccaaagggatagttttttctgactatggtccttattggcgtagtgt |
30071074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 30045503 - 30045244
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
|||||||| || |||||||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
30045503 |
ataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
30045404 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaagcatctcagct |
222 |
Q |
| |
|
| ||| | ||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||| ||||| || ||||||| ||||| |||| |||| |
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|
| T |
30045403 |
tcccagctattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccacgacatcgttttcgcaagccgaccaaagattcaaggatctgagct |
30045304 |
T |
|
| Q |
223 |
cattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgt |
282 |
Q |
| |
|
||| | ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30045303 |
catgtcttatggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgt |
30045244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 29949346 - 29949535
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
29949346 |
ataattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttacaacttggtcaag |
29949445 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactcaag |
212 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||| |
|
|
| T |
29949446 |
ttccaacaattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatcaaatttgcaagccggccaaagattcaag |
29949535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 29990509 - 29990777
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| || |||| |
|
|
| T |
29990509 |
ataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaattatgtctttacaacttggacaag |
29990608 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatcaattttgcaagtcggccaaagactca-agcatctcagc |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| || || || ||| | || | | || |
|
|
| T |
29990609 |
ttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgttttcgcaaaccgaccgaa-acttataggagcagaga |
29990707 |
T |
|
| Q |
222 |
tcattttttatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
291 |
Q |
| |
|
|||| | |||||||| ||||||||||| |||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
29990708 |
tcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaact |
29990777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 29943678 - 29943839
Alignment:
| Q |
23 |
ataataggaaatcttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttacaactaggtcaag |
122 |
Q |
| |
|
||||| ||||| || ||||| ||||| | |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
29943678 |
ataatcggaaacctccacatattaggcacccttccacatagaacacttcaatcactctccaaacaatatggtccaatcatgtccttacaactaggtcaag |
29943777 |
T |
|
| Q |
123 |
ttccaacaattgttatttcatcttcaaaagcagcagaatcattcctcaaaactcatgacatc |
184 |
Q |
| |
|
| ||| | ||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||| |
|
|
| T |
29943778 |
tcccagctattgtcatttcatcttcaaaagccgcagagtcattcgtcaaaacccatgacatc |
29943839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 29952006 - 29952067
Alignment:
| Q |
230 |
tatggttcgaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaact |
291 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||| |
|
|
| T |
29952006 |
tatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaact |
29952067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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