View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_low_5 (Length: 295)
Name: NF20337_low_5
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 277
Target Start/End: Original strand, 7106253 - 7106507
Alignment:
| Q |
23 |
atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacct |
122 |
Q |
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| T |
7106253 |
atgccgccttcttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgcgagtttttcaaaaaccagattgagtcggatacct |
7106352 |
T |
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| Q |
123 |
caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttcc |
222 |
Q |
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| T |
7106353 |
caccagcctatggagatggattcagatcgggttaccaggcggtacttaagtatgggctcgaaagcacccttgatcatatccatttgaccggaacttttcc |
7106452 |
T |
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| Q |
223 |
atgttgaaaatttgaaagttagcataactttttcgcccatatgaaccaatgcctc |
277 |
Q |
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| T |
7106453 |
atgttgaaaatttgaaagttagcataactttttcgcccatatgaaccaatgcctc |
7106507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 7094051 - 7094290
Alignment:
| Q |
38 |
tctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagcctatggag |
137 |
Q |
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| T |
7094051 |
tctgcatcatcgaagaagggtaaacggtctgattttgagaagaaacttggcgagtttttcaaaaaccagattgagtcagatacctcaccagcctatggag |
7094150 |
T |
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| Q |
138 |
atggattcagatcgggttaccaggcggtacttaagtatgggcttgaaagcacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga |
237 |
Q |
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| T |
7094151 |
atggattcagatcgggttaccaggcggtacttaagtatgggctcaaaagtacccttgatcatatccatttgaccggaacttttccatgttgaaaatttga |
7094250 |
T |
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| Q |
238 |
aagttagcataactttttcgcccatatgaaccaatgcctc |
277 |
Q |
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| T |
7094251 |
aagctagcataattttttcgcccatatgaaccaatgcctc |
7094290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 33406065 - 33405917
Alignment:
| Q |
33 |
cttcttctgcatcatcgaagaagggtaaaaggtctgattttgagaagaaactttgtgagtttttcaaaaaccagattgagtcggatacctcaccagccta |
132 |
Q |
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|||| ||| |||| || |||||||||||| |||| |||||||||||| ||||| || | ||||| ||| ||||||||||| | |||| |||||||||||| |
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| T |
33406065 |
cttcctctacatcttcaaagaagggtaaacggtccgattttgagaaggaacttggtaaattttttaaacaccagattgagaccgatagctcaccagccta |
33405966 |
T |
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| Q |
133 |
tggagatggattcagatcgggttaccaggcggtacttaagtatgggctt |
181 |
Q |
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| T |
33405965 |
tggagatggatttagagagggtaaccaggcagtgctcaagtatgggctt |
33405917 |
T |
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