View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_low_6 (Length: 250)
Name: NF20337_low_6
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 44914714 - 44914472
Alignment:
| Q |
1 |
caatgcttggattaagattctgcattgctggattttcaagagtctgtttcacaatagcatttgatgtagtggttcttgaatcacccagcctgctttttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44914714 |
caatgcttggattaagattctgcattgctggattttcaagagtctgtttcacaatagcatttgatgtagtgattcttgaatcacccagcctgctttttga |
44914615 |
T |
|
| Q |
101 |
attctctagcactctatctatacggactttttccccatctattttattactagaagtgacagcattcctcggtcgctttatctgcaaattgggctgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44914614 |
attctctagcactctatctatacggactttttccccatctattttattactagaagtgacagcattcctcggtcgctttatctgcaaattgggctgaaac |
44914515 |
T |
|
| Q |
201 |
acaagttcaacgtcattaggatgcatacatcacacagaataat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44914514 |
acaagttcaacgtcattaggatgcatacatcacacagaataat |
44914472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7748421 - 7748179
Alignment:
| Q |
1 |
caatgcttggattaagattctgcattgctggattttcaagagtctgtttcacaatagcatttgatgtagtggttcttgaatcacccagcctgctttttga |
100 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |||| | ||||| |
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| T |
7748421 |
caatgcttgggttaagattttgcattgctggattttcaagagtctgttgtacaatagcatttgatgtagtgactcccgaatcacccaacctgttgtttga |
7748322 |
T |
|
| Q |
101 |
attctctagcactctatctatacggactttttccccatctattttattactagaagtgacagc------------attcctcggtcgctttatctgcaaa |
188 |
Q |
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|||||| | ||||||||||| | ||||||| |||| ||||| |||||||||||||| || |||||| ||||||| |||||||| |
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| T |
7748321 |
gttctcttgtactctatctatgcatacttttttgccatggattttgttactagaagtgacggctaactctgggatattccttaatcgctttctctgcaaa |
7748222 |
T |
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| Q |
189 |
ttgggctgaaacacaagttcaacgtcattaggatgcatacatc |
231 |
Q |
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| T |
7748221 |
ttaagctgaaacacaagttcaacaacattaggatgcatacatc |
7748179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2337804 - 2337551
Alignment:
| Q |
1 |
caatgcttggattaagattctgcattgctggattttcaagagtctgtttcacaatagcatttgatgtagtggttcttgaatcacccagcctgctttttga |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
2337804 |
caatgcttggattaagattttgcactgctaaatttttaagagtctgtttcacaatagcatttgatgtagtgattcttgaatcattcaacctgctttttgt |
2337705 |
T |
|
| Q |
101 |
attctctagcactctatctatacggactttttccccatctattttattactagaagtgacagc------------attcctcggtcgctttatctgcaaa |
188 |
Q |
| |
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|||||| ||||||||||||| |||||| ||||| || ||||||||||||| |||||| ||||||| |||||| |||||||| |
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| T |
2337704 |
gttctcttgcactctatctatgtatacttttatcccatggatattattactagaagcgacagcaaactctgggatattcctcaatcgcttcctctgcaaa |
2337605 |
T |
|
| Q |
189 |
ttgggctgaaacacaagttcaacgtcattaggatgcatacatcacacagaataa |
242 |
Q |
| |
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||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
2337604 |
ttgagctgaaacacaagttcaaaatcattaggatgcatacatcacacacaataa |
2337551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2338348 - 2338189
Alignment:
| Q |
1 |
caatgcttggattaagattctgcattgctggattttcaagagtctgtttcacaatagcatttgatgtagtggttcttgaatcacccagcctgctttttga |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| | |||||| | ||| |
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| T |
2338348 |
caatgcttggattaagattttgcattactggattttcaagagtctgtttcacaatagcatttgatgtagtgattctcgactcaccgaacctgctatctga |
2338249 |
T |
|
| Q |
101 |
attctctagcactctatctatacggactttttccccatctattttattactagaagtgac |
160 |
Q |
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||||| |||| | |||||| | |||||| |||| |||||||||||||||||||| |
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| T |
2338248 |
gttctcatgcacaccatctatgcattcttttttcccagggattttattactagaagtgac |
2338189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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