View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20337_low_7 (Length: 223)
Name: NF20337_low_7
Description: NF20337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20337_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 2100895 - 2100997
Alignment:
| Q |
39 |
atatttgatttacgtacaaaaatattcaatgtctaatatcctgtaaattgtagcatacaatatacaaaccattcaatcattctagtcttcaatgattgaa |
138 |
Q |
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| T |
2100895 |
atatttggtttacatacaaaaatattgaacgtctgatatgctggaaattgtagcatacaatatacaaacgattcaatcattgttgtcttcaatgattgaa |
2100994 |
T |
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| Q |
139 |
tgt |
141 |
Q |
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||| |
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| T |
2100995 |
tgt |
2100997 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 2101063 - 2101110
Alignment:
| Q |
138 |
atgtgtagaaggattagtctatactttagaatataatgtctgatacgt |
185 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2101063 |
atgtgtagaaggattggtctatactttagaatataatgtctgatacgt |
2101110 |
T |
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