View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20338_low_1 (Length: 453)
Name: NF20338_low_1
Description: NF20338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20338_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 231 - 436
Target Start/End: Original strand, 36361695 - 36361900
Alignment:
| Q |
231 |
tgtaccttaatatcagcttttgaaccatgataatttctttaaagatgtgatgaatctacgtgtatctacattcagaccagttcttaccctcaatttttga |
330 |
Q |
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| T |
36361695 |
tgtaccttcatataagcttttgaaccatgataatttctttaaagatgctatgaatctacgtgtatttacatccagacccgttcttaccctcaatttttaa |
36361794 |
T |
|
| Q |
331 |
gtagtagaacaagaaaacttgaacaaatttgtattttgcaatttgttatatgtgtgttatgatcaaattacttaagatctatttataagccaaacacact |
430 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |
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| T |
36361795 |
gtagtggaacaagaaaacttgaacaaatttatattttgcaatttgttatatgtgtgttgtgattaaattacttaagatctatttataagccacacacact |
36361894 |
T |
|
| Q |
431 |
accatc |
436 |
Q |
| |
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|||||| |
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| T |
36361895 |
accatc |
36361900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 36361467 - 36361632
Alignment:
| Q |
1 |
aattaagccttattattagagagagtctaatgaggctttgataaacaatactaaacacttgaagaagtgctaattaaaatagttacttaactagttgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36361467 |
aattaagccttattattagagagagtctaatgaggctttgataaacaatactaaacacttgaagaagtgctaattaaaatagttacttaattagttgatt |
36361566 |
T |
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| Q |
101 |
agaatagattaagtctttcgagtgaataaggaaaaacgctatattttatcttcaaatgcttatattag |
168 |
Q |
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| T |
36361567 |
agaatagattaagtctttcgagtgaataaggaaaaa--ctctattttatcttcaaatgcttatattag |
36361632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 41194049 - 41194140
Alignment:
| Q |
256 |
catgataatttctttaaagatgtgatgaatctacgtgtatctacattcagaccagttcttaccctcaatttttgagtagtagaacaagaaaa |
347 |
Q |
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| T |
41194049 |
catgaaaaattctttaaagatgtgaagactctaagtgtatctacaccgagatcaattcttactctcaacctttgagtagtggaacaagaaaa |
41194140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 36100225 - 36100289
Alignment:
| Q |
304 |
agaccagttcttaccctcaatttttgagtagtagaacaagaaaacttgaacaaatttgtattttg |
368 |
Q |
| |
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|
| T |
36100225 |
agaccaattcttaccctcaacctttgagtagtggaactagaaaactagaacatatttctattttg |
36100289 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 418
Target Start/End: Original strand, 21560111 - 21560261
Alignment:
| Q |
262 |
aatttctttaaagatgtgatgaatctacgtgtatctacattcagaccagttcttaccctcaatttttgagtagtagaacaagaaaacttgaacaaatttg |
361 |
Q |
| |
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||||||||||||||||||| | | |||||||||| || |||||| |||||||||||||| ||||| |||| ||||| ||||||| | ||| ||| |
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| T |
21560111 |
aatttctttaaagatgtgaaaactttacgtgtatccacgccgagaccaattcttaccctcaatctttgaatagtgaaacaaaaaaactt--ataaaattg |
21560208 |
T |
|
| Q |
362 |
tattttgcaatttgttatatgtgtgttatgatcaaattacttaagatctatttataa |
418 |
Q |
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||||||| ||||||| ||| ||| |||||||||| |||||||||||||||||| |
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| T |
21560209 |
tattttgtaatttgt----tgtatgtagtgatcaaattgcttaagatctatttataa |
21560261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 26464341 - 26464307
Alignment:
| Q |
385 |
tgttatgatcaaattacttaagatctatttataag |
419 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
26464341 |
tgttgtgatcaaattacttaagatctatttataag |
26464307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 8547259 - 8547210
Alignment:
| Q |
383 |
tgtgttatgatcaaattacttaagatctatttataagccaaacacactac |
432 |
Q |
| |
|
|||||| |||| |||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
8547259 |
tgtgttgtgattaaatcacttaaggtctatttataagccacacacactac |
8547210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 29672738 - 29672802
Alignment:
| Q |
285 |
tctacgtgtatctacattcagaccagttcttaccctcaatttttgagtagtagaacaagaaaact |
349 |
Q |
| |
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|||||||||||| ||| |||||| ||||||||||||| |||||||||| |||| |||||||| |
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| T |
29672738 |
tctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaact |
29672802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 499772 - 499662
Alignment:
| Q |
256 |
catgataatttctttaaagatgtgatgaatctacgtgtatctacattcagaccagttcttaccctcaatttttgagtagtagaacaagaaaacttgaaca |
355 |
Q |
| |
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||||| || |||| |||| || ||| || ||||||| |||||||| | |||||||||||||| ||||| |||||||| | ||||||||||||||| || |
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| T |
499772 |
catgaaaaattctataaaaatatgaagactctacgtatatctacactaagaccagttcttacactcaacctttgagtaatggaacaagaaaacttg--ca |
499675 |
T |
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| Q |
356 |
aatttgtattttg |
368 |
Q |
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|||||||||||| |
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| T |
499674 |
tatttgtattttg |
499662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 40772465 - 40772368
Alignment:
| Q |
250 |
ttgaaccatgataatttctttaaagatgtgatgaatctacgtgtatctacattcagaccagttcttaccctcaatttttgagtagtagaacaagaaaact |
349 |
Q |
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| T |
40772465 |
ttgaagcatgagaaattcttcaaagatgtgaagactctacgtgtatccacact--gaccaattcttaccctcaacctttgagtagtggaacaataaaact |
40772368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 21593407 - 21593365
Alignment:
| Q |
390 |
tgatcaaattacttaagatctatttataagccaaacacactac |
432 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||||||| |
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|
| T |
21593407 |
tgatcaaattacttaaggtctatttataagtcatacacactac |
21593365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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