View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20338_low_2 (Length: 437)
Name: NF20338_low_2
Description: NF20338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20338_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 18245391 - 18244969
Alignment:
| Q |
1 |
tggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaagtacagagaa |
100 |
Q |
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| T |
18245391 |
tggaaacaaatgggcaatgatagctagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaagtacagagaa |
18245292 |
T |
|
| Q |
101 |
caatctaatgcatacaggagaagaagattgagccaaaatgtttatagcagaatggagcaaaatccaagcttcggccgcagggaaaccgcaacaatggaaa |
200 |
Q |
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| T |
18245291 |
caatctaatgcatacaggagaagaagattgagccaaaatgtttacagcagaatggagcaaaatccaagcttcggccgcagggacaccgcaacaatggaaa |
18245192 |
T |
|
| Q |
201 |
cagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttcccatatgctacttctttccaacattgtgctcatggtgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18245191 |
cagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttccaatatgctacttctttccaacattgtgctcatggtgg |
18245092 |
T |
|
| Q |
301 |
tagggttgagtatggtttagatgttttacctcacatgagtggtgagagagaagctatgcaaggacccctacatgttggtttgtatgctcaacaagcacct |
400 |
Q |
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| T |
18245091 |
tagggttgagtatggtttaaatgttttacctcacatgagtggtgagagagaagctatgcaaggacccctacatgttggtttgtatgctcaacaagcacct |
18244992 |
T |
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| Q |
401 |
tttgattacttctctggtctgtg |
423 |
Q |
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| T |
18244991 |
tttgattacttctctggtgtgtg |
18244969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 31791082 - 31790982
Alignment:
| Q |
5 |
aacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaagtacagagaacaat |
104 |
Q |
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||||||||||| ||||| || || || ||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31791082 |
aacaaatgggccatgattgctaggcttttccctggaagaactgataatgctgttaagaatcactggcatgttataatggcaagaaagtacagagaacaat |
31790983 |
T |
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| Q |
105 |
c |
105 |
Q |
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| T |
31790982 |
c |
31790982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 40752076 - 40751988
Alignment:
| Q |
2 |
ggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaa |
90 |
Q |
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||||||||||||||| | ||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
40752076 |
ggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggctagaaa |
40751988 |
T |
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