View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20338_low_4 (Length: 345)
Name: NF20338_low_4
Description: NF20338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20338_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 18245670 - 18245972
Alignment:
| Q |
14 |
atatacatctcttcataagttcatatacacatagttttaaattttaattatggttgcaatacaacaatttttgcaaccgaaatttaagactatgtgaaca |
113 |
Q |
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| T |
18245670 |
atatacatctcttcataagttcatatacacatagttttaaattttaattatggttgcaatataacaatttttgcaaccgaaatttaagactatgtgaaca |
18245769 |
T |
|
| Q |
114 |
catactaaatgagnnnnnnnnnnnnnnnnnnnnntagtttttcaagatctatatcaagaaacaaaagattgtgagcatgcttgggatcagagtttgacaa |
213 |
Q |
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| T |
18245770 |
catactaaatgagaaaataaaaagaaaataaatatagtttttcaagatgtatatcaagaaacaaaagattgtgagcatgcttgggatcagagtttgacaa |
18245869 |
T |
|
| Q |
214 |
aatcacagtcacatcatgattttgttgaagcttaaaagtatagcttgtgccaaaaccacaacgacatactgtcattctcttagagttattgttgatccaa |
313 |
Q |
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| T |
18245870 |
aaccacagtcgcatcgtgattttgttgaagc---------tagcttgtgccaaaaccacaacgacatactgtcattctctcagagtcactgttgatccaa |
18245960 |
T |
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| Q |
314 |
acatacatgata |
325 |
Q |
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|||||||||||| |
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| T |
18245961 |
acatacatgata |
18245972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 23585693 - 23585742
Alignment:
| Q |
203 |
gagtttgacaaaatcacagtcacatcatgattttgttgaagcttaaaagt |
252 |
Q |
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| T |
23585693 |
gagtttgacaaaatcacagtgacaacatgattttgttgaagtttcaaagt |
23585742 |
T |
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