View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20338_low_5 (Length: 247)
Name: NF20338_low_5
Description: NF20338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20338_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 46702326 - 46702451
Alignment:
| Q |
19 |
ggacgaccctgctgcacaactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggtgtgtaatact |
118 |
Q |
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| T |
46702326 |
ggacgaccctgctgcacaactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggggtgtaatact |
46702425 |
T |
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| Q |
119 |
cgtttcttatgtttatgcctaaatta |
144 |
Q |
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| T |
46702426 |
cgtttcttatgtttatgcctaaatta |
46702451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 46702522 - 46702611
Alignment:
| Q |
143 |
tataggtgtatgtgttttcctaaatcatgatgtagtgcacataagttcttaattgttaaccaaatttgaacatttattgacacatctgtg |
232 |
Q |
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| T |
46702522 |
tataggtgtatgtgttttcctaaatcatgatgtagtgcacataagttcttaattgttaaccaaatttgaacatttattgacacatctgtg |
46702611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 46129541 - 46129664
Alignment:
| Q |
19 |
ggacgaccctgctgcacaactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggtgtgtaatact |
118 |
Q |
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| T |
46129541 |
ggacgaccctgctgcacaactggaagcagctactcagtttggaaagctactgtcagggggtatgaatgtagtggttgtattttacctggggtgttttact |
46129640 |
T |
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| Q |
119 |
cgtttcttatgtttatgcctaaatt |
143 |
Q |
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| T |
46129641 |
cgtttcttatg-ttatgcctaaatt |
46129664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 46123516 - 46123614
Alignment:
| Q |
21 |
acgaccctgctgcacaactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggtgtgtaatactc |
119 |
Q |
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| T |
46123516 |
acgaccctgctgcacaacttgaagcaactactcagtttggaaagctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactc |
46123614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 46129737 - 46129812
Alignment:
| Q |
143 |
tataggtgtatgtgttttcctaaatcatgatgtagtgcacataagttcttaattgttaaccaaa-tttgaacattt |
217 |
Q |
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| T |
46129737 |
tataggcgtatgtgttttcctaaatcatgatgtggtgcacataagttcttaatttttaaccaaattttgaacattt |
46129812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 46123725 - 46123790
Alignment:
| Q |
153 |
tgtgttttcctaaatcatgatgtagtgcacataagttcttaattgttaaccaaa-tttgaacattt |
217 |
Q |
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| T |
46123725 |
tgtgtttccctaaatcatgatgtagttctcataagttcttaatttttaaccaaattttgaacattt |
46123790 |
T |
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