View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_high_14 (Length: 343)
Name: NF20339_high_14
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 2759189 - 2759522
Alignment:
| Q |
1 |
tagtagtaataatggaggtgctaatagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagtggctgcagaaacacaatagaa |
100 |
Q |
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| T |
2759189 |
tagtagtaataatggaggtgctaacagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagtggctgcagaaacacaatagaa |
2759288 |
T |
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| Q |
101 |
gttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataattgtggagaaagaagaccacatgtatataaggattaaaagaaag |
200 |
Q |
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| T |
2759289 |
gttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataattgtggagaaagaagaccaaatgtatataaggattaaaagaaag |
2759388 |
T |
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| Q |
201 |
attaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagattgtttgggttctaattttcttgaaaatttggaccgttttttgg |
300 |
Q |
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| T |
2759389 |
attaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagattgtttgggttctaattttcttgaaaatttggaccgttttttgg |
2759488 |
T |
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| Q |
301 |
ataaagacactgccatttttgtgatgagaataat |
334 |
Q |
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| T |
2759489 |
ataaagacactgccattattgtgatgagaataat |
2759522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 2755230 - 2755446
Alignment:
| Q |
3 |
gtagtaataatggaggtgctaatagtattattgtttatggaataagttgggatatcaaaggaaggattagtatgagtggctgcagaaacacaatagaagt |
102 |
Q |
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| T |
2755230 |
gtagtaattatagaggtgctaatagtattattgtttatggaataatttgagatttcaaaggaagtattagtatgagtgggtgaagaaagacaataaaagc |
2755329 |
T |
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| Q |
103 |
tatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataattgtggagaaagaagaccacatgtatataaggattaaaagaaagat |
202 |
Q |
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| T |
2755330 |
tattactgaactttcttgtagaacaacaaacatgaatggtgttgactgttataatagtggataaagaagaccacatgtagattaggaataaaagaaagat |
2755429 |
T |
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| Q |
203 |
taaagcagaaattctac |
219 |
Q |
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| T |
2755430 |
taaagccgaaattctac |
2755446 |
T |
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