View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_high_16 (Length: 330)
Name: NF20339_high_16
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 55986844 - 55986661
Alignment:
| Q |
134 |
aaatgtagaagtttgtattaatgctgtgaggaagcacacaaagggaaatactatcttgttggttgagtggtgttatcctccatcgatgtttttaaaatgg |
233 |
Q |
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| T |
55986844 |
aaatgtagaagtttgtattaatgctgtgaggaagcacacaaagggaaatactatcttgttggttgagtggtgttatcctccatcgatgtttttacaatgg |
55986745 |
T |
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| Q |
234 |
cacagatgcctatgcataaataaattgagattgcttagggattagggatggacctttttattccttcttgcgtttgttgattct |
317 |
Q |
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| T |
55986744 |
cacagatgcctatgcataaataaattgagattgcttagggattagagatggacctttttattccttcttgcgtttgttgattct |
55986661 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 31782111 - 31782162
Alignment:
| Q |
134 |
aaatgtagaagtttgtattaatgctgtgaggaagcacacaaagggaaatact |
185 |
Q |
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||||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
31782111 |
aaatgtagaagcgagtattaatactgtgatgaagcacacaaagggaaatact |
31782162 |
T |
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