View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20339_high_2 (Length: 694)

Name: NF20339_high_2
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20339_high_2
NF20339_high_2
[»] chr7 (1 HSPs)
chr7 (14-678)||(47592294-47592958)


Alignment Details
Target: chr7 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 14 - 678
Target Start/End: Complemental strand, 47592958 - 47592294
Alignment:
Q  14 ttcttagaagtctcagctattgaagaatcctaaaacaacataatgatcatgcatgcacataatcacatgaaacaagttcgtaattgttcacgcaaaagcc 113  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47592958 ttcttagaagtctcagctattgaagaatcctacaacaacataatgatcatgcatgcacataatcacatgaaacaggttcgtaattgttcacgcaaaagcc 47592859  T
Q  114 taatcacaaataaaaatgcaacgtaagccctagtatcccataccccacatctgacattcattttgtgcaggcatatgcaatgaagtggaggctgagctta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47592858 taatcacaaataaaaatgcaacgtaagccctagtatcccataccccacatctgccattcattttgtgcaggcatatgcaatgaagtggaggctgagctta 47592759  T
Q  214 ccggattatcttcattgtgtgtttcttctttctttatggtttcttcagggataaaactgcatccacgtaaagcagcagcctttcttgtagcagtttttgt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47592758 ccggattatcttcattgtgtgtttcttctttctttatggtttcttcagggataaaactgcatccacgtaaagcagcagcctttcttgtagcagtttttgt 47592659  T
Q  314 tctctttcctgtaaaggtggtatgtgttgaaactttgggagcactgaccaccaatgatgaaagtgatctttccttcctttttggtggcaggggtgttgag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47592658 tctctttcctgtaaaggtggtatgtgttgaaactttgggagcactgaccaccaatgatgaaagtgatctttccttcctttttggtggcaggggtgttgag 47592559  T
Q  414 ggaacaacttcttcggctttaaccttttgtcgtttacaagggaatattttggtcctaatatcttgcagattgtgatcaggcctgaaggtaattaataggc 513  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47592558 ggaacaacttcttcggctttaaccttttgtcgtttacatgggaatattttggtcctaatatcttgcagattgtgatcaggcctgaaggtaattaataggc 47592459  T
Q  514 acaaatgatcaaaattatgaacgcatctttgtatagatttatcagacatctgatatttaagttctacaaaacaatgtatgcatgaaatcatataagaata 613  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47592458 acaaatgatcaaaattatgaatgcgtctttgtatagatttatcagacatctgatatttaagttctacaaaacaatgtatgcatgaaatcatttaagaata 47592359  T
Q  614 agtcattccagtttaaaagacaggttgaactaaatagggggtgtaatatgcttggagatgaggaa 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47592358 agtcattccagtttaaaagacaggttgaactaaatagggggtgtaatatgcttggagatgaggaa 47592294  T

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