View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20339_high_28 (Length: 244)
Name: NF20339_high_28
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33523230 - 33523458
Alignment:
| Q |
1 |
ctttaaatcctcattcatcacaaagtaaatcaatactctattgtaaccttcaaactcacattcaaagtataagcaaacaaaaacataagctcaccaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33523230 |
ctttaaatcctcattcatcacaaagtaaatcaatactctattgtaaccttcaaactcacattcaaagtataagcaaacaaaaacataagctcaccaagaa |
33523329 |
T |
|
| Q |
101 |
agaagaaaagcaagccaagatttgaggtattcataggagcaagagattcaaaaatcacaaaatcacatattttgggttgaaaaccatccatatttgtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33523330 |
agaagaaaagcaagccaagatttgaggtattcataggagcaagagattcaaaaatcacaaaatcacatattttgggttgaaaaccatccatatttgtgtt |
33523429 |
T |
|
| Q |
201 |
tttcattactcaac---atgcaagcatcc |
226 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
33523430 |
tttcattactcaacaacatgcaagcatcc |
33523458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University