View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20339_high_31 (Length: 208)
Name: NF20339_high_31
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 54471464 - 54471333
Alignment:
| Q |
62 |
ttctcaaaagaaagcgatgaccaaggtgaatgtgcatggtaatagatacacccagaagaaaacgtgtttcttttccaactcacctctcctacaagcaact |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54471464 |
ttctcaaaagaaagcgatgaccaaggtga-tgtgcatggtaatagatacacccagaagaaaacgtgtttcttttccaactcacctctcctacaagcaact |
54471366 |
T |
|
| Q |
162 |
atttctctatttttaacatgctatatgcttttt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
54471365 |
atttctctatttttaacatgctatatgcttttt |
54471333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University