View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_high_4 (Length: 645)
Name: NF20339_high_4
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 19 - 630
Target Start/End: Original strand, 5213971 - 5214581
Alignment:
| Q |
19 |
gtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattctttaacttacatcagatgtattgttttgctgaattacatgatttattaataaaaag |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
5213971 |
gtattgtcttcaaaagcttctaaaaccttcgtaaatcttcattctttaacttacatcagatatattgttttgctgaattacatgatttatcaataaaaag |
5214070 |
T |
|
| Q |
119 |
actcaacacatatggagttgtctgattaaaaaagaaattgaattacaatgactcaaaccaaaacaacacnnnnnnn----tccctcaaaccatgaacaac |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5214071 |
actcaacacatatggagttgtctggttaaaaaagaaattgaattacaacgactcaaaccaaaacaacacaaaaaaaaaaatccctcaaaccatgaacaac |
5214170 |
T |
|
| Q |
215 |
tcatctgcaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattgctaaaatattatatgatatgatataatatagtgccatcaaa |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
5214171 |
tcatctgaaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattactaaaatattatat-----gatataatatagtgtcatcaaa |
5214265 |
T |
|
| Q |
315 |
tagtagtgtaggatcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttgaaataatttccaacgggctataatt |
414 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5214266 |
tagtagtgtagggtcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttgaaataattttcaacgggctataatt |
5214365 |
T |
|
| Q |
415 |
gtttttggtacttggcatgttggagctagatgttgattggcattttctcatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214366 |
gtttttggtacttggcatgttggagctagatgttgattggcattttcttatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtc |
5214465 |
T |
|
| Q |
515 |
atttttgtctaacttcaaattgataattagccaaaaaattattcacatggacatgtttcattgctagcatcacaggcgataaatatttgcttccccgacc |
614 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
5214466 |
atttttgtctagcttcaaattgataattagccaaaaaattattcacatggacatgtttcattactagcatcacaggcgataattatttgcttccccgacc |
5214565 |
T |
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| Q |
615 |
tcggtagcgtcctttg |
630 |
Q |
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| T |
5214566 |
ttggtagcgtcctttg |
5214581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 8308989 - 8309041
Alignment:
| Q |
77 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacat |
129 |
Q |
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| T |
8308989 |
gatgtcttgttttgctgatttacatgatttcttactaaaaagactcaaaacat |
8309041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 20044321 - 20044238
Alignment:
| Q |
91 |
ctgaattacatgatttattaataaaaagactcaaca--catatggagttgtctgattaaaaaagaaattgaattacaatgactc |
172 |
Q |
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| T |
20044321 |
ctgaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgattaaggaagaaattgaattacaatgactc |
20044238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 13275704 - 13275749
Alignment:
| Q |
79 |
tgtattgttttgctgaattacatgatttattaataaaaagactcaa |
124 |
Q |
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||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
13275704 |
tgtattgctttgccgaattacatgatttagcaataaaaagactcaa |
13275749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 26297904 - 26297809
Alignment:
| Q |
77 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacatatggagttgtctgattaaaaaagaaattgaattacaatgactc |
172 |
Q |
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||||| ||||||||| || ||||||||||||| | |||| |||||||||||||||| ||||| ||||| | | |||||||||||||| ||||| |
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| T |
26297904 |
gatgtcttgttttgccgatttacatgatttatcactaaatagactcaacacatatgaagttgcatgatttaggataaaattgaattacaacgactc |
26297809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 1174075 - 1173996
Alignment:
| Q |
65 |
taacttacatcagatgtattgttttgctgaattacatgatttattaataaaaagactcaa--cacatatggagttgtctg |
142 |
Q |
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| T |
1174075 |
taacttccatgagatattttgctttgccgaagtacatgatttattaataaaaagactcaaagcacctatgaagttgtctg |
1173996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 1462410 - 1462370
Alignment:
| Q |
66 |
aacttacatcagatgtattgttttgctgaattacatgattt |
106 |
Q |
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||||| ||| || |||||||||||||||||||||||||||| |
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| T |
1462410 |
aacttccataagttgtattgttttgctgaattacatgattt |
1462370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 20694797 - 20694734
Alignment:
| Q |
77 |
gatgtattgttttgctgaattacatgatttattaataaaaagactc--aacacatatggagttg |
138 |
Q |
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||||| ||||||||| || ||||||||||| ||| ||||||||||| |||||||||| ||||| |
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| T |
20694797 |
gatgtcttgttttgccgatttacatgatttcttactaaaaagactcaaaacacatatgcagttg |
20694734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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