View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_high_5 (Length: 503)
Name: NF20339_high_5
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 10530274 - 10530452
Alignment:
| Q |
16 |
aagaacaaatagacaacgtcggcttctagagcgaactgtggtccatggtcaattattactcacaatcattaaaatattgctctaataaacattagatttt |
115 |
Q |
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| T |
10530274 |
aagaacaaatagacagcgtcggcttctagagcaaactgtggtccacggtcgattattactcacaatcattaaaatattgctctaataaacattagatttt |
10530373 |
T |
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| Q |
116 |
agtataatcgactgttgtgagtgataatcaacctgtcacctacgtccaccctagacagaaaacctaaacaaccaatata |
194 |
Q |
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| T |
10530374 |
agtataatcgactgttgtgagtgataataaacctgtcacctacgtccaccctagacagaaaacctaaacaaccaatata |
10530452 |
T |
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Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 254 - 483
Target Start/End: Original strand, 20679548 - 20679777
Alignment:
| Q |
254 |
ttgttaaccgtcctttccaccataagggttgtcatctcttgtcggccatcactttatgttgctacatatacatgtttgattttgatcttcattgatgtca |
353 |
Q |
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| T |
20679548 |
ttgttaaccatcctttccacgataaggattatcatccgttgtcggacatcactttacgttgctacatatacatgtttgattttgatcttcattgatgcca |
20679647 |
T |
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| Q |
354 |
caacgtcacaatcagtttgattctcgtcggccatcgttatgcgaggtcttcaaaagggttttaagttttggagtacgacctaggttagttcagttgcctc |
453 |
Q |
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| T |
20679648 |
caacgtcacgataagtttgattctcgtcggccatcgttatgcgagatctccgaaagggttttaagttttagagtacgaactaggttagttcagtcgcctc |
20679747 |
T |
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| Q |
454 |
cacggcgtcttgatcaaaggatgcatcgcg |
483 |
Q |
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| T |
20679748 |
cacgacgtcttgatcaaaggatgcatcgcg |
20679777 |
T |
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