View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20339_low_1 (Length: 717)

Name: NF20339_low_1
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20339_low_1
NF20339_low_1
[»] chr2 (6 HSPs)
chr2 (455-701)||(18371789-18372035)
chr2 (64-322)||(41581574-41581843)
chr2 (65-314)||(13789067-13789327)
chr2 (516-627)||(21872645-21872756)
chr2 (518-580)||(18830366-18830428)
chr2 (289-324)||(41581532-41581567)
[»] chr8 (10 HSPs)
chr8 (64-322)||(7000035-7000304)
chr8 (65-318)||(111730-111994)
chr8 (64-321)||(42762223-42762491)
chr8 (64-322)||(34751917-34752186)
chr8 (64-321)||(27411979-27412241)
chr8 (479-581)||(8989709-8989811)
chr8 (495-583)||(22471085-22471173)
chr8 (289-322)||(1236339-1236372)
chr8 (289-322)||(7000311-7000344)
chr8 (478-567)||(28914347-28914436)
[»] chr5 (3 HSPs)
chr5 (64-322)||(37147311-37147580)
chr5 (64-321)||(7329710-7329978)
chr5 (64-321)||(34538128-34538396)
[»] chr6 (5 HSPs)
chr6 (64-321)||(12987729-12987997)
chr6 (70-322)||(2141867-2142130)
chr6 (164-258)||(1951296-1951391)
chr6 (602-662)||(23142828-23142888)
chr6 (289-322)||(12987686-12987719)
[»] chr3 (4 HSPs)
chr3 (27-322)||(44370009-44370315)
chr3 (64-322)||(36471954-36472223)
chr3 (534-698)||(14801094-14801257)
chr3 (183-254)||(4516997-4517070)
[»] chr7 (10 HSPs)
chr7 (64-322)||(6568009-6568278)
chr7 (64-322)||(28302941-28303210)
chr7 (64-322)||(34483289-34483558)
chr7 (64-321)||(28299376-28299644)
chr7 (480-622)||(9634541-9634683)
chr7 (480-686)||(16191956-16192160)
chr7 (163-258)||(44156783-44156879)
chr7 (601-701)||(16177789-16177888)
chr7 (516-561)||(21935478-21935523)
chr7 (289-322)||(28164759-28164792)
[»] chr4 (8 HSPs)
chr4 (64-322)||(123123-123392)
chr4 (135-260)||(45803220-45803346)
chr4 (480-622)||(13602563-13602705)
chr4 (480-664)||(3462363-3462548)
chr4 (480-583)||(17279028-17279131)
chr4 (183-254)||(18036456-18036529)
chr4 (289-322)||(123083-123116)
chr4 (289-322)||(53189631-53189664)
[»] chr1 (13 HSPs)
chr1 (64-322)||(8250850-8251118)
chr1 (480-701)||(18895280-18895499)
chr1 (135-260)||(13651213-13651339)
chr1 (139-260)||(13685936-13686058)
chr1 (135-260)||(19137106-19137232)
chr1 (135-322)||(13507347-13507545)
chr1 (133-259)||(24249082-24249208)
chr1 (135-260)||(13611492-13611618)
chr1 (135-249)||(13514618-13514733)
chr1 (478-673)||(22585990-22586185)
chr1 (149-214)||(51139442-51139507)
chr1 (480-669)||(27272069-27272258)
chr1 (289-323)||(8250808-8250842)
[»] scaffold0006 (1 HSPs)
scaffold0006 (135-260)||(140974-141100)
[»] scaffold0004 (1 HSPs)
scaffold0004 (480-673)||(225953-226146)
[»] scaffold0079 (1 HSPs)
scaffold0079 (480-629)||(16301-16447)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 455 - 701
Target Start/End: Complemental strand, 18372035 - 18371789
Alignment:
Q  455 taccacttttctattttcaaaaggttgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaac 554  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  18372035 taccacttttctattttcaaaaggttgaattgataagttcaaataatgaatcttaagaacaaaatcaattatcaatattcatacatacaaattgaaaaac 18371936  T
Q  555 taaacaatctcaaactcaacctattaacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttga 654  Q
    |||||||||||||| | |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  18371935 taaacaatctcaaattgaacctattaacaattaagaaaattagcacctaataaacacaagacatatgaatcaacttgtttgatgattacttgaaacttga 18371836  T
Q  655 ttgtgagaatttcaattgatagaatctcaattgtattaattgagatt 701  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18371835 ttgtgagaatttcaattgatagaatctcaattgaattaattgtgatt 18371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 41581574 - 41581843
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41581574 tcacacatattaagaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtccttgtcttggaaacatgacttttgaactccaccaatgaa 41581673  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  41581674 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 41581773  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  41581774 tacttttgcttacatttgagaccaacaatttttttattttgtttcttacattcgagaccggagggagtat 41581843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 65 - 314
Target Start/End: Original strand, 13789067 - 13789327
Alignment:
Q  65 cacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaaa 164  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  13789067 cacacatattaagaaagtggattgagtcattgtaaaaaatatcattttttctgttatgcccttgtcttggaaacatgaattttgaactccaccaatgaaa 13789166  T
Q  165 aatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg---------- 253  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||              
T  13789167 aatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttatat 13789266  T
Q  254 acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccgga 314  Q
    |||||||||||||||||||||||||||       ||||| |||||||||||||||||||||    
T  13789267 acttttgcttacatttgagaccaacaatttttttgttttatttcttacattcgagaccgga 13789327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 627
Target Start/End: Complemental strand, 21872756 - 21872645
Alignment:
Q  516 aaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctattaacagttaagaaaactagcacctaatgaacacaaga 615  Q
    ||||||| |||||| |||||  ||||||||||| ||||||||||||||||||||  ||||| |||||| | ||  | |||| ||  ||||||||||||||    
T  21872756 aaatcaaatatcaaaattcaatcatacaaattgcaaaactaaacaatctcaaacaaaaccttttaacaataaatcacactaacaagtaatgaacacaaga 21872657  T
Q  616 catatgaatcaa 627  Q
     |||||||||||    
T  21872656 tatatgaatcaa 21872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 580
Target Start/End: Original strand, 18830366 - 18830428
Alignment:
Q  518 atcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatta 580  Q
    ||||| ||||||||||||  |||| |||||| |||||||||||| |||||||| |||||||||    
T  18830366 atcaaatatcaatattcaagcataaaaattgcaaaactaaacaaactcaaactaaacctatta 18830428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 41581567 - 41581532
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtatct 324  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41581567 ttttgtttcttacattcaagaccggagggagtatct 41581532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 64 - 322
Target Start/End: Complemental strand, 7000304 - 7000035
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  7000304 tcacacatattaagaaagtggattgagtcattgtaaaaaagaccatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 7000205  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||             
T  7000204 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaatatgatgacttttgta 7000105  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  7000104 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccggagggagtat 7000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 65 - 318
Target Start/End: Complemental strand, 111994 - 111730
Alignment:
Q  65 cacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaaa 164  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  111994 cacacatattaagaaagtgaattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaaa 111895  T
Q  165 aatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg---------- 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||              
T  111894 aatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgatttttgtat 111795  T
Q  254 acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggaggga 318  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||    
T  111794 acttttgcttacatttgagaccaacaattcttttgttttgtttcttacattcgagatcggaggga 111730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 64 - 321
Target Start/End: Complemental strand, 42762491 - 42762223
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  42762491 tcacacatattaaaaaagtggattgagtcattgtaaaaaatatcatttttcctgttatgcccttgtcttggaaacatgacttttgaacttcaccaatgaa 42762392  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||             
T  42762391 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattgtaatagtaacatttaataggatgacttttgta 42762292  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||    
T  42762291 tacttttgcttacatttaagaccaacaatttttttgttttgtttcttacattcgagaccggagggagta 42762223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 64 - 322
Target Start/End: Complemental strand, 34752186 - 34751917
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  34752186 tcacatatattaagaaagtggattgagtcattgtaaaaaataccatttttcttgttatgcccttgtcttggaaacatgacttttgaattccaccaatgaa 34752087  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||             
T  34752086 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaagttaaaattggaatagtaacatttaatagaatgacttttgta 34751987  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  34751986 tacttttgcttacatttgagaccaacaatttttttattttgtttcttacattcgagaccggagggagtat 34751917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 64 - 321
Target Start/End: Complemental strand, 27412241 - 27411979
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| | ||||| || ||      |||||||||||||||||| ||    
T  27412241 tcacacatattaaaaaagtggattgagtcattgtaaaaaataccatttttactgttatgcccttgtcatgaaa------cttttgaactccaccaataaa 27412148  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  27412147 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 27412048  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||    
T  27412047 tacttttgcttacatttgagaccaacaatttttttattttatttcttacattcgagaccggagggagta 27411979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 581
Target Start/End: Complemental strand, 8989811 - 8989709
Alignment:
Q  479 ttgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctat 578  Q
    ||||||||| | ||| ||||| |||||||||   ||||||| || ||| ||||||||  ||||||||||  ||||||||||||||||||||  |||||||    
T  8989811 ttgaattgagaggttcaaatattgaatcttattaagaaaataaaatataaatattcaagcatacaaatttcaaaactaaacaatctcaaaccaaacctat 8989712  T
Q  579 taa 581  Q
    |||    
T  8989711 taa 8989709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 583
Target Start/End: Original strand, 22471085 - 22471173
Alignment:
Q  495 aaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctattaaca 583  Q
    ||||| |||||||||   || ||||||| ||||||||||||   |||||||||| |||||||||||||||||||   ||||||||||||    
T  22471085 aaatattgaatcttattaagcaaatcaaatatcaatattcaagtatacaaattgcaaaactaaacaatctcaaatcaaacctattaaca 22471173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 1236339 - 1236372
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    |||||||||||||||| |||||||||||||||||    
T  1236339 ttttgtttcttacatttgagaccggagggagtat 1236372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 7000311 - 7000344
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  7000311 ttttgtttcttacattcaagaccggagggagtat 7000344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 567
Target Start/End: Original strand, 28914347 - 28914436
Alignment:
Q  478 gttgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaa 567  Q
    |||||||| ||| ||| ||||| |||||||||   || | ||||| ||||||||||||  || |||||||  ||||||||||||||||||    
T  28914347 gttgaattcataggtttaaatattgaatcttattaagcacatcaaatatcaatattcaagcaaacaaattttaaaactaaacaatctcaa 28914436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 64 - 322
Target Start/End: Complemental strand, 37147580 - 37147311
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  37147580 tcacacatattaaaaaagtggattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaatatgacttttgaactccaccaatgaa 37147481  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  37147480 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 37147381  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  37147380 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccggagggagtat 37147311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 64 - 321
Target Start/End: Original strand, 7329710 - 7329978
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||    
T  7329710 tcacacatattaagaaagtggattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaacataacttttaaactccaccaatgaa 7329809  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||             
T  7329810 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttgaaattggaatattaacatttaataggatgacttttgta 7329909  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||    
T  7329910 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccgaagggagta 7329978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 64 - 321
Target Start/End: Complemental strand, 34538396 - 34538128
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  34538396 tcacacatattaagaaagtggattgagtcattgtaaaaaatatcatttttcctgttatgcccttgttttggaaacatgacttttgaactccaccaatgaa 34538297  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||             
T  34538296 aaatctttggaatgcgttaaacatgagaatgtgaaataaattagataaagtaaatgaggttaaaattggaatagtaacatttaatatgatgacttttgta 34538197  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  34538196 tacttttgcttacatttgagaccaacaatttttttattttgtttcttacattcgagaccggagggagta 34538128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 64 - 321
Target Start/End: Original strand, 12987729 - 12987997
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  12987729 tcacacatattaagaaagtggattgagtcattgtaaaaaatatcatttttcctgttatgcccttgtcttggaaacatgacttttgaactccacgaatgaa 12987828  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  12987829 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 12987928  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  12987929 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccggagggagta 12987997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 70 - 322
Target Start/End: Original strand, 2141867 - 2142130
Alignment:
Q  70 atattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaaaaatct 169  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  2141867 atattaagaaagtggattgagtcattgtaaaaaatatcatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatct 2141966  T
Q  170 ttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg----------acttt 258  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||          |||||    
T  2141967 ttggaatgcattaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatacttt 2142066  T
Q  259 tgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
    ||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||    
T  2142067 tgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagatcggagggagtat 2142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 1951296 - 1951391
Alignment:
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgag-gttaaattggaatagtaacatttaataggatgacttt 258  Q
    ||||||||| || | |||||||||| ||||||||||||||||  ||||||  |||||| || ||||||||||| |  |||||||||||||||||||    
T  1951296 aaatctttgaaaagtgttaaacatgagaatgtgaaacaaattcaataaagctaatgagtgtaaaattggaataatgtcatttaataggatgacttt 1951391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 662
Target Start/End: Original strand, 23142828 - 23142888
Alignment:
Q  602 taatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgaga 662  Q
    ||||||||||||||||||||||| || || ||||| | |||||| ||||| ||||||||||    
T  23142828 taatgaacacaagacatatgaattaatttgtttgaagcttactttaaactagattgtgaga 23142888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 12987719 - 12987686
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  12987719 ttttgtttcttacattcaagaccggagggagtat 12987686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 44370315 - 44370009
Alignment:
Q  27 tactcccttcggttttgaatgtaagaaacnnnnnnnntcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcat 126  Q
    |||||||| |||||||||||||||||||         |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |    
T  44370315 tactccctccggttttgaatgtaagaaaaaaaaaaattcacacatattaagaaagtggatcgagtcattgtaaaaaataccatttttcctgttatgccct 44370216  T
Q  127 tgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-a 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  44370215 tgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataacgtaaatgaggttaa 44370116  T
Q  226 aattggaatagtaacatttaataggatg----------acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggag 315  Q
    ||||||||||||||||||||||||||||          |||||||||||||||||| ||||||||       ||||||||||||||||||||||| ||||    
T  44370115 aattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgataccaacaatttttttgttttgtttcttacattcgagacgggag 44370016  T
Q  316 ggagtat 322  Q
    |||||||    
T  44370015 ggagtat 44370009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 64 - 322
Target Start/End: Complemental strand, 36472223 - 36471954
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  36472223 tcacacatattaagaaagtggattgagtcactgtaaaaaataccatttttccagttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 36472124  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||             
T  36472123 aaatatttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtgacatttaataggatgatttttata 36472024  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     | |||||||||||||||||||||| ||       |||| ||||||||||||||||||||||||||||||    
T  36472023 tatttttgcttacatttgagaccaataatttttttgtttggtttcttacattcgagaccggagggagtat 36471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 534 - 698
Target Start/End: Complemental strand, 14801257 - 14801094
Alignment:
Q  534 catacatacaaattgaaaaactaaacaatctcaaactcaacctattaacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatt 633  Q
    ||||||| ||||||| ||||| ||||||||||||||  |||||||||||| || ||||||||| || |||||  ||||||||||||||||||||||| ||    
T  14801257 catacatccaaattgcaaaacgaaacaatctcaaaccaaacctattaacaattgagaaaactaacaactaatatacacaagacatatgaatcaacttgtt 14801158  T
Q  634 tgatgattacttgaaacttgattgtgagaatttcaattgatagaatctcaattgtattaattgag 698  Q
    |||  ||| ||||||| ||||||||||||| |  |||||| |||| |||||||| | ||||||||    
T  14801157 tgagaatttcttgaaatttgattgtgagaa-taaaattgaaagaaactcaattgaagtaattgag 14801094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 4516997 - 4517070
Alignment:
Q  183 aacatgggaatgtgaaacaaattggata-aagtaaatga-ggttaaattggaatagtaacatttaataggatga 254  Q
    ||||||||||||||||||| |||||| | || ||||||| ||| |||||| |||||| ||||||||||||||||    
T  4516997 aacatgggaatgtgaaacagattggaaataaataaatgagggtaaaattgaaatagtgacatttaataggatga 4517070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 5e-98; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 6568009 - 6568278
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||    
T  6568009 tcacacatattaagaaagtggattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaatatgacttttgaactccactaatgaa 6568108  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  6568109 aaatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgatttttgta 6568208  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  6568209 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccggagggagtat 6568278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 64 - 322
Target Start/End: Complemental strand, 28303210 - 28302941
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  28303210 tcacacatattaagaaagtggattgagtcattataaaaaatatcatttttcctgttatgcccttgtcttggaaacatgacttttgaattccaccaatgaa 28303111  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||             
T  28303110 aaatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 28303011  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||    
T  28303010 tacttttgcttacatttgagaccaacaatttttttgttttgtttcttacatttgagaccggagggagtat 28302941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 34483289 - 34483558
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  34483289 tcacacatattaagaaagtggattgagtcattgtaaaaaatactatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 34483388  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||             
T  34483389 aaatcattgaaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaatagaatgacttttgta 34483488  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||    
T  34483489 tacttttgcttacatttgagaccaacaatttttttattttgtttcttacattcgagactggagggagtat 34483558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 64 - 321
Target Start/End: Complemental strand, 28299644 - 28299376
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  28299644 tcacaaatattaagaaagtggattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaacatgacttttgaattccaccaatgaa 28299545  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggat---------- 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||              
T  28299544 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaaataaatgaggttaaaattggaatagtaatatttaatagaataacttttgta 28299445  T
Q  253 gacttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagta 321  Q
     |||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||| ||||    
T  28299444 tacttttgcttacatttgagatcaacaatttttttgttttgtttcttacattcgagaccggaggaagta 28299376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 480 - 622
Target Start/End: Complemental strand, 9634683 - 9634541
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||||| | |||  ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||   ||||||||    
T  9634683 tgaattgagaggttcaaataatgagttttattgagcaaatcaattatcaatattcatacataccaattgcaaaactaaacaatctcaaatcaaacctatt 9634584  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatga 622  Q
    || |   ||  | |||| || ||||||||||||||| ||||||    
T  9634583 aaaaacaaatcacactaacaactaatgaacacaagatatatga 9634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 480 - 686
Target Start/End: Complemental strand, 16192160 - 16191956
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||  ||||| ||| ||| ||||||| |||| |||||| | |||||||  |||||||  |||||| |||||||||| || ||||||  ||||||||    
T  16192160 tgaattgtgaagttcaaagaatcaatcttatggagcaaatcattaatcaatacacatacatttaaattgcaaaactaaactatttcaaaccaaacctatt 16192061  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaattgatagaat 679  Q
    ||||   ||  |   ||  ||||||||||||||||||||||||||||| |||||||| |||||| |  ||| |||||||||||| || |||||| |||||    
T  16192060 aacaaaaaaacaccttaatacctaatgaacacaagacatatgaatcaatttatttgaagattaccttcaac-tgattgtgagaa-ttaaattgagagaat 16191963  T
Q  680 ctcaatt 686  Q
    |||||||    
T  16191962 ctcaatt 16191956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 44156783 - 44156879
Alignment:
Q  163 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaa-ttggaatagtaacatttaataggatgacttt 258  Q
    |||||||||| || | |||||||| |||||||| ||| ||||| |||||||| ||||||| |||| |||||||||| | ||||||||||||| ||||    
T  44156783 aaaatctttgaaaagtgttaaacaagggaatgtaaaataaatttgataaagttaatgagggtaaaattggaatagtgatatttaataggatggcttt 44156879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 16177888 - 16177789
Alignment:
Q  601 ctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaattgatagaatctcaattgtattaattgagat 700  Q
    |||||||||||||| |||||||||||| || ||||| | ||| ||  ||||||||| |||||| || |||||| ||||||| ||||| | ||||||||||    
T  16177888 ctaatgaacacaaggcatatgaatcaatttgtttgaagcttagtttcaacttgattatgagaa-ttaaattgagagaatctaaattgaagtaattgagat 16177790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 561
Target Start/End: Original strand, 21935478 - 21935523
Alignment:
Q  516 aaatcaattatcaatattcatacatacaaattgaaaaactaaacaa 561  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||||||    
T  21935478 aaatcaaatatcaatattcaagcatacaaattgcaaaactaaacaa 21935523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 28164792 - 28164759
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    |||||||||||||||| |||||||||||||||||    
T  28164792 ttttgtttcttacatttgagaccggagggagtat 28164759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 123123 - 123392
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  123123 tcacacatattaagaaagtggattgagtcattgtaaaaaataccatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaacaatgaa 123222  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatgacttttg-- 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||      
T  123223 aaatatttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagattaaaattggaatagtaacatttaatagaatgacttttgta 123322  T
Q  261 --------cttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
            ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  123323 tacttttccttacatttgagaccaacaatttttttgttttgtttcttacattcgagaccggagggagtat 123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 45803220 - 45803346
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg-ttaaattggaa 233  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| |||||||||| || |||||||    ||||||||||| ||||||| | |||||| ||    
T  45803220 aaacacgacttttgaattccacaaatgaaaaatctttggaatgggttaaacatgagagtgtgaaaatttttggataaagttaatgaggataaaattgaaa 45803319  T
Q  234 tagtaacatttaataggatgacttttg 260  Q
    |||| |||||||||| ||||| |||||    
T  45803320 tagtgacatttaatatgatgatttttg 45803346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 13602563 - 13602705
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||||| | |||  ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||   ||||||||    
T  13602563 tgaattgagaggttcaaataatgagttttattgagcaaatcaattatcaatattcatacataccaattgcaaaactaaacaatctcaaatcaaacctatt 13602662  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatga 622  Q
    || |   ||  | |||| || ||||||||||||||| ||||||    
T  13602663 aaaaacaaatcacactaacaactaatgaacacaagatatatga 13602705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 480 - 664
Target Start/End: Original strand, 3462363 - 3462548
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||||||||||| |||| | |||||  || ||||  ||||||| ||||||| ||||||||| ||||||||||  ||||||||    
T  3462363 tgaattgagaggttcaaataatgaatcttatggagcatatcaacaattaatacacatacattcaaattgcaaaactaaaaaatctcaaaccaaacctatt 3462462  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaa-cttatttgatgattacttgaaacttgattgtgagaat 664  Q
    || |   ||  | |||  || ||| |||||||||||||||||||||||  || ||||  | |||||| ||||||||||||||||||    
T  3462463 aataaaaaatcacactgacaactattgaacacaagacatatgaatcaattttgtttgtagcttactttaaacttgattgtgagaat 3462548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 583
Target Start/End: Complemental strand, 17279131 - 17279028
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||||||||||| |||| | |||||  |||||||   |||||| | ||||| ||||||||||||||||||||  ||||||||    
T  17279131 tgaattgagaggttcaaataatgaatcttatggagcatatcaacaatcaatacaaatacattcgaattgcaaaactaaacaatctcaaaccaaacctatt 17279032  T
Q  580 aaca 583  Q
    ||||    
T  17279031 aaca 17279028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 18036529 - 18036456
Alignment:
Q  183 aacatgggaatgtgaaacaaattggata-aagtaaatgaggttaaa-ttggaatagtaacatttaataggatga 254  Q
    ||||||||||||||||||| |||||| | || ||||||||| |||| ||| |||||| ||||||||||||||||    
T  18036529 aacatgggaatgtgaaacagattggaaataaataaatgagggtaaaattgaaatagtgacatttaataggatga 18036456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 123116 - 123083
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  123116 ttttgtttcttacattcaagaccggagggagtat 123083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 53189631 - 53189664
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtat 322  Q
    |||||||||||||||| |||||||||||||||||    
T  53189631 ttttgtttcttacatttgagaccggagggagtat 53189664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 5e-95; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 8250850 - 8251118
Alignment:
Q  64 tcacacatattacgaaagtggattgagtcattgtaaaaaataccatttttcctgttatgtcattgtcttggaaacatgacttttgaactccaccaatgaa 163  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  8250850 tcacacatattaagaaagtggattgagtcattgtaaaaaatatcatttttcctgttatgcccttgtcttggaaacatgatttttgaactccaccaatgaa 8250949  T
Q  164 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggtt-aaattggaatagtaacatttaataggatg--------- 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||             
T  8250950 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaatatgatgacttttgta 8251049  T
Q  254 -acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
     |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  8251050 tacttttgcttacatttgagaccaacaa-ttttttgttttgtttcttacattcgagaccggagggagtat 8251118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 480 - 701
Target Start/End: Original strand, 18895280 - 18895499
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| |||||||||||||||   || || ||||| ||||| |  ||||||| ||||||| ||||| ||||||||| ||||  || ||| |    
T  18895280 tgaattgagaggttcaaataatgaatcttatatagcaagtcaataatcaaca--catacatccaaattgcaaaaccaaacaatcttaaaccaaaactaat 18895377  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaattgatagaat 679  Q
    |||| |||||||||||| |||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  18895378 aacaattaagaaaactaacaccaaaggaacacaagacatatgaatcaacttgtttgacgattacttgaaacttgattgtgagaatttaaattgaaagaat 18895477  T
Q  680 ctcaattgtattaattgagatt 701  Q
    || ||||| | |||||||||||    
T  18895478 cttaattgaagtaattgagatt 18895499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 13651339 - 13651213
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||  ||||| ||| | |||||||    
T  13651339 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagataatgagggtgagattggaa 13651240  T
Q  234 tagtaacatttaataggatgacttttg 260  Q
    ||| |||||||||||||| ||||||||    
T  13651239 tagcaacatttaataggacgacttttg 13651213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 13686058 - 13685936
Alignment:
Q  139 atgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaatagt 237  Q
    ||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||| ||||| ||| | |||||||||||    
T  13686058 atgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagttaatgagggtgagattggaatagt 13685959  T
Q  238 aacatttaataggatgacttttg 260  Q
    |||||||||||| | ||||||||    
T  13685958 aacatttaatagaacgacttttg 13685936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 19137106 - 19137232
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||| ||||||||||  ||||||| ||||| ||| |  ||||||    
T  19137106 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgggaaacaaattaaataaagttaatgagggtgaggttggaa 19137205  T
Q  234 tagtaacatttaataggatgacttttg 260  Q
    |||||||||||||||||| ||||||||    
T  19137206 tagtaacatttaataggacgacttttg 19137232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 135 - 322
Target Start/End: Complemental strand, 13507545 - 13507347
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| | ||||| ||| | |||||||||||||||||||||||||||  ||||||| ||||| ||| | |||||||    
T  13507545 aaacatgacttttgaactaaaccaatgaatactctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagttaatgagggtgagattggaa 13507446  T
Q  234 tagtaacatttaataggatg----------acttttgcttacatttgagaccaacaannnnnnngttttgtttcttacattcgagaccggagggagtat 322  Q
    ||| |||||||||||||| |          | ||||||||| ||||||||||| |||       ||||||||||| ||||||||||||| |||||||||    
T  13507445 tagcaacatttaataggacgatttttttatatttttgcttatatttgagaccatcaatttttttgttttgtttctcacattcgagaccgtagggagtat 13507347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 24249208 - 24249082
Alignment:
Q  133 ggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattgg 231  Q
    ||||||||||||| |||| ||| | | ||||||||||||  || | |||||| ||||||||||||||||||||||||||||| ||||| ||| ||| |||    
T  24249208 ggaaacatgacttatgaattccgcga-tgaaaaatcttttaaaagtgttaaatatgggaatgtgaaacaaattggataaagttaatgagggtaaaagtgg 24249110  T
Q  232 aatagtaacatttaataggatgactttt 259  Q
    |||||| |||||||||| ||||||||||    
T  24249109 aatagtgacatttaatatgatgactttt 24249082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 13611618 - 13611492
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | ||||||||||||||| |||||||||||  ||  ||| ||||| ||| | |||||||    
T  13611618 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatttgaaacaaattaaatttagttaatgagggtgagattggaa 13611519  T
Q  234 tagtaacatttaataggatgacttttg 260  Q
    |||||||||||||||| | ||||||||    
T  13611518 tagtaacatttaatagaacgacttttg 13611492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 13514733 - 13514618
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | ||||||||||| ||| |||||||||||  ||||||| ||||| ||| | |||||||    
T  13514733 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatggaaatatgaaacaaattaaataaagttaatgagggtgagattggaa 13514634  T
Q  234 tagtaacatttaatag 249  Q
    ||| ||||||||||||    
T  13514633 tagaaacatttaatag 13514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 673
Target Start/End: Original strand, 22585990 - 22586185
Alignment:
Q  478 gttgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaaccta 577  Q
    |||||||||| |  || ||||||||||||||| |||| |||||||| || ||||  |||||||||||||| |||||||||||||||||||||  ||| ||    
T  22585990 gttgaattgagagcttcaaataatgaatcttatggagtaaatcaataattaatacacatacatacaaatttaaaaactaaacaatctcaaaccaaactta 22586089  T
Q  578 ttaacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaattga 673  Q
    |||| |   ||  | || | || |||||||||||||| ||||||||| |  || ||||| | | |||| ||||| |||||||||||| | ||||||    
T  22586090 ttaataacaaatcacaccaacaactaatgaacacaaggcatatgaattactttgtttgaagctgactttaaactagattgtgagaatattaattga 22586185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 51139507 - 51139442
Alignment:
Q  149 aactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagt 214  Q
    |||| ||| |||||||||| ||||||| | ||||||||||||||||||||| |||||| |||||||    
T  51139507 aacttcacaaatgaaaaatatttggaaagtgttaaacatgggaatgtgaaataaattgaataaagt 51139442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 669
Target Start/End: Complemental strand, 27272258 - 27272069
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||||||||||| | |  |||||||| |||||||  ||| ||| ||||||  ||||||||||||||||| ||  |||| |||    
T  27272258 tgaattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaatacacatgcattcaaatttcaaaactaaacaatctcacaccaaacccatt 27272159  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaa 669  Q
    ||||   ||  | |||  || ||| |||||||||  | ||||||| || || ||||| |||||||| ||| | |||||||| ||||||||    
T  27272158 aacaacaaatcatactcacaactattgaacacaatgcttatgaattaatttgtttgaagattactttaaagtagattgtgaaaatttcaa 27272069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 8250842 - 8250808
Alignment:
Q  289 ttttgtttcttacattcgagaccggagggagtatc 323  Q
    ||||||||||||||||| |||||||||||||||||    
T  8250842 ttttgtttcttacattcaagaccggagggagtatc 8250808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 141100 - 140974
Alignment:
Q  135 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga-ggttaaattggaa 233  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||  ||||| ||| | |||||||    
T  141100 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagataatgagggtgagattggaa 141001  T
Q  234 tagtaacatttaataggatgacttttg 260  Q
    ||| |||||||||||||| ||||||||    
T  141000 tagcaacatttaataggacgacttttg 140974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 480 - 673
Target Start/End: Complemental strand, 226146 - 225953
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||| ||||||| | ||||| |||| |||||||| |||||||   |||||| |||||   |||||||||||||||||||   ||||||||    
T  226146 tgaattgagaggttcaaataattagtcttatggagcaaatcaataatcaatacagatacattcaaatcccaaaactaaacaatctcaaatcaaacctatt 226047  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaacttatttgatgattacttgaaacttgattgtgagaatttcaattga 673  Q
    ||||   ||  | |||| || |||||||||| ||||||||||||| |  || ||||| | |||||| ||||  |||||||||||| ||||||||    
T  226046 aacaacaaatcacactaacaactaatgaacagaagacatatgaattactttgtttgaagcttactttaaacaagattgtgagaatctcaattga 225953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 629
Target Start/End: Original strand, 16301 - 16447
Alignment:
Q  480 tgaattgataagttaaaataatgaatcttaaggagaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaactcaacctatt 579  Q
    |||||||| | ||||||| |||||||||||   ||||| ||||  |||||||  || |||||||||||| |||||||||| |||||||||| |||||| |    
T  16301 tgaattgagaggttaaaa-aatgaatcttataaagaaattcaacaatcaata--cacacatacaaattgcaaaactaaactatctcaaactaaacctagt 16397  T
Q  580 aacagttaagaaaactagcacctaatgaacacaagacatatgaatcaact 629  Q
    ||||   ||  | |||| || |||||||||| |||  |||||||||||||    
T  16398 aacaacaaatcacactaacaactaatgaacaaaaggtatatgaatcaact 16447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University