View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_11 (Length: 373)
Name: NF20339_low_11
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 49180708 - 49180365
Alignment:
| Q |
11 |
cacagaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacac |
110 |
Q |
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| T |
49180708 |
cacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacac |
49180609 |
T |
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| Q |
111 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaacca |
210 |
Q |
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| T |
49180608 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccattttttc-gcaaggattgggcatatcattttatctgtaataacatgtgaggaacca |
49180510 |
T |
|
| Q |
211 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180509 |
tgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgt |
49180410 |
T |
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| Q |
311 |
ggcatatagccatttttgtaagtcactgcattaaacaaagaattt |
355 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49180409 |
ggcatatagccatttttgtaagtcactgcattgaacaaagaattt |
49180365 |
T |
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