View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20339_low_12 (Length: 351)

Name: NF20339_low_12
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20339_low_12
NF20339_low_12
[»] chr4 (21 HSPs)
chr4 (37-334)||(44924806-44925102)
chr4 (39-120)||(35748551-35748632)
chr4 (39-123)||(31092390-31092474)
chr4 (283-334)||(6908833-6908884)
chr4 (43-116)||(22787278-22787351)
chr4 (39-119)||(32871717-32871797)
chr4 (42-119)||(32058263-32058340)
chr4 (39-119)||(12592943-12593023)
chr4 (43-112)||(44121120-44121189)
chr4 (260-334)||(6901367-6901442)
chr4 (60-122)||(45511442-45511504)
chr4 (42-88)||(52378959-52379005)
chr4 (39-120)||(10376130-10376211)
chr4 (39-120)||(54221944-54222025)
chr4 (57-115)||(12706286-12706344)
chr4 (42-115)||(32556489-32556563)
chr4 (39-119)||(51377180-51377261)
chr4 (39-112)||(52697584-52697656)
chr4 (51-119)||(1015092-1015160)
chr4 (96-124)||(11493242-11493270)
chr4 (43-119)||(16531832-16531908)
[»] chr8 (12 HSPs)
chr8 (44-120)||(14127354-14127430)
chr8 (39-117)||(37568399-37568477)
chr8 (46-115)||(39199887-39199956)
chr8 (42-118)||(1775414-1775490)
chr8 (42-118)||(4721835-4721911)
chr8 (39-119)||(26628997-26629077)
chr8 (39-119)||(33938368-33938448)
chr8 (48-119)||(37521971-37522042)
chr8 (42-91)||(3155929-3155978)
chr8 (42-119)||(28434548-28434625)
chr8 (39-112)||(30170627-30170700)
chr8 (43-120)||(43066481-43066558)
[»] chr7 (22 HSPs)
chr7 (39-118)||(47925440-47925519)
chr7 (39-119)||(11503465-11503545)
chr7 (39-102)||(49094641-49094704)
chr7 (40-120)||(6427316-6427395)
chr7 (57-119)||(6892522-6892584)
chr7 (39-112)||(2005657-2005731)
chr7 (42-116)||(7714730-7714804)
chr7 (40-118)||(48314254-48314332)
chr7 (39-120)||(22588848-22588929)
chr7 (39-118)||(16829573-16829652)
chr7 (39-119)||(48395345-48395425)
chr7 (43-82)||(8352882-8352921)
chr7 (39-118)||(16953999-16954078)
chr7 (42-112)||(37855085-37855155)
chr7 (73-115)||(45606953-45606995)
chr7 (43-80)||(2849446-2849483)
chr7 (42-103)||(24957097-24957158)
chr7 (48-121)||(41750217-41750290)
chr7 (39-112)||(42663310-42663383)
chr7 (39-120)||(45256618-45256699)
chr7 (42-118)||(7212552-7212628)
chr7 (39-91)||(23816384-23816436)
[»] chr6 (7 HSPs)
chr6 (39-119)||(11113902-11113982)
chr6 (39-114)||(10840821-10840896)
chr6 (39-110)||(20029362-20029433)
chr6 (37-120)||(31204697-31204780)
chr6 (42-87)||(38700-38743)
chr6 (42-119)||(25109149-25109226)
chr6 (43-112)||(34019824-34019893)
[»] chr2 (19 HSPs)
chr2 (39-117)||(14151652-14151730)
chr2 (42-118)||(40106704-40106780)
chr2 (37-118)||(9366017-9366098)
chr2 (39-120)||(31629707-31629788)
chr2 (43-123)||(13453839-13453919)
chr2 (39-119)||(40602273-40602354)
chr2 (39-120)||(30416466-30416547)
chr2 (39-115)||(30415117-30415193)
chr2 (58-119)||(39233641-39233702)
chr2 (42-119)||(45376107-45376184)
chr2 (42-88)||(28544129-28544175)
chr2 (48-112)||(43820636-43820700)
chr2 (39-114)||(15123825-15123900)
chr2 (43-118)||(22966893-22966968)
chr2 (39-116)||(15610725-15610802)
chr2 (39-112)||(32900221-32900294)
chr2 (39-112)||(34432392-34432465)
chr2 (94-127)||(37966358-37966391)
chr2 (57-113)||(37468158-37468214)
[»] chr5 (9 HSPs)
chr5 (39-115)||(5740449-5740525)
chr5 (39-119)||(35474483-35474563)
chr5 (42-120)||(35570916-35570994)
chr5 (39-123)||(5899770-5899854)
chr5 (42-118)||(26754527-26754603)
chr5 (46-120)||(4800387-4800461)
chr5 (42-112)||(35475920-35475990)
chr5 (39-119)||(844136-844216)
chr5 (39-119)||(30838253-30838333)
[»] chr3 (14 HSPs)
chr3 (39-121)||(38017806-38017888)
chr3 (39-119)||(47187408-47187488)
chr3 (283-334)||(202101-202152)
chr3 (39-115)||(38910491-38910567)
chr3 (260-334)||(206947-207022)
chr3 (39-115)||(6977017-6977093)
chr3 (38-120)||(37073760-37073842)
chr3 (42-112)||(39901693-39901763)
chr3 (39-119)||(34102964-34103044)
chr3 (42-118)||(41851047-41851123)
chr3 (39-118)||(41448071-41448150)
chr3 (42-121)||(48335318-48335397)
chr3 (39-121)||(9326871-9326953)
chr3 (72-129)||(19961921-19961978)
[»] scaffold1625 (1 HSPs)
scaffold1625 (44-119)||(669-744)
[»] chr1 (15 HSPs)
chr1 (275-334)||(29514286-29514345)
chr1 (39-118)||(43891666-43891745)
chr1 (53-119)||(40809604-40809670)
chr1 (39-116)||(49804826-49804903)
chr1 (39-118)||(28501550-28501628)
chr1 (43-120)||(27804719-27804796)
chr1 (42-123)||(12021781-12021864)
chr1 (39-115)||(51231199-51231274)
chr1 (278-334)||(43625995-43626052)
chr1 (39-123)||(3904285-3904369)
chr1 (43-110)||(35883504-35883571)
chr1 (48-119)||(38519880-38519951)
chr1 (94-122)||(2533236-2533264)
chr1 (42-112)||(34453371-34453440)
chr1 (39-114)||(50777315-50777391)
[»] scaffold0295 (2 HSPs)
scaffold0295 (39-119)||(6031-6111)
scaffold0295 (39-119)||(3546-3626)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 37 - 334
Target Start/End: Complemental strand, 44925102 - 44924806
Alignment:
Q  37 tgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaactatacttgttag 136  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44925102 tgttgtttttatccaataagaagagaggaaaagtaattgtcacaaaagttgtctaggattagttgtacaaatatcattcctctaaaactatacttgttag 44925003  T
Q  137 tgtgaacgaaataaaagagaaatgtagagattatttctttacttaactttgaatagatcctcaattatatttttcacttgctgtatgcttatgggtccct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44925002 tgtgaacgaaataaaagagaaatgtagagattatttctttacttaactttgaatagatcctcaattatatttttcacttgctgtatgcttatgggtccct 44924903  T
Q  237 agagttttgtttaannnnnnnnnctttctatttagtattaatgaaatatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 334  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924902 agagttttgtttaa-ttttttttctttctatttagtattaatgaaatatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 44924806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 35748632 - 35748551
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||| | ||| ||||||||||||||||    
T  35748632 ttgtttttatccattaagaaaagaggaaaagtagttgtcacaaaaattgtctaagattgatcgtagaaatatcattcctcta 35748551  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 31092474 - 31092390
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 123  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||| || |||| ||||| |||||||||||||||| ||||||||    
T  31092474 ttgtttttatctaataagaaaagaggaaaagtgattgtcacaaaagttttctaagattgattgtacaaatatcatttctctaaaa 31092390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 6908884 - 6908833
Alignment:
Q  283 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908884 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 6908833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 22787278 - 22787351
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 116  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||| ||  || ||||||||||||||||||||    
T  22787278 ttttatccaataagaagagagaaaaaatggttgtctcaaaaattgtttaaaataggttgtacaaatatcattcc 22787351  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 32871797 - 32871717
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||| ||||||||||||||| |||||| || | ||||| || ||||| ||||||||||||| ||||||    
T  32871797 ttgtttttatccaataaaaagagaggaaaagtgattgtcaaaagagttgtcaagaattggatgtacaaatatcactcctct 32871717  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 32058340 - 32058263
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||| ||  || | |||||||||||||| ||||||    
T  32058340 tttttatccaataagaagagaggaaaaatggttgtctcaaaagttgtttaaaatggattgtacaaatatcactcctct 32058263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 12593023 - 12592943
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||||||||||||||||||| || || ||||| || ||||  | |||| |||||| |||||||||||||||    
T  12593023 ttgtttttatccaataagaagagaggaaaaatgattatcacacaagttgttcaagattagttgtataaatatcattcctct 12592943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 44121189 - 44121120
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||  ||  |||||||||||||||    
T  44121189 ttttatccaataagaagagaggaaaaatggttgtctcaaaagttgtttaaaatgagttgtacaaatatca 44121120  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 6901367 - 6901442
Alignment:
Q  260 ctttctatttagtattaatgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 334  Q
    ||||||||||||| ||  | |||||||| |||| |||||||||||||| | ||||||||||||||| |||||||||    
T  6901367 ctttctatttagtcttgttcaaatatgtctgggcatggatgataatgttattttttggtttcatagagttgggagg 6901442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 45511442 - 45511504
Alignment:
Q  60 agaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaa 122  Q
    ||||||||||||| |||||||||| |||| ||  ||||| ||||||||||||| |||||||||    
T  45511442 agaggaaaagtggatgtcacaaaagttgtttaaaattggatgtacaaatatcactcctctaaa 45511504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 52379005 - 52378959
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt 88  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  52379005 tttttatccaataaaaagagagaaaaagtggttgtcacaaaagttgt 52378959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 10376130 - 10376211
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||  |||||||| |||||  ||||| ||||||| |||| |||||| ||  ||||||||||||||||||| |||||||    
T  10376130 ttgttttagtccaataaaaagaggagaaaaatggttgttacaagaattgtatacaattggttgtacaaatatcactcctcta 10376211  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 54222025 - 54221944
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||| |||||| | |||||| ||||| | |||||||| ||| |||||||  ||| ||||||||||||||| |||||||    
T  54222025 ttgtttttgtccaatcacaagagaagaaaaatagttgtcaccaaagttgtctaatattagttgtacaaatatcactcctcta 54221944  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 12706286 - 12706344
Alignment:
Q  57 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    ||||||||||||  |||||||| ||||| ||| ||  ||||||||||||||||||||||    
T  12706286 aagagaggaaaaaaggttgtcataaaaaatgtttaaaattggttgtacaaatatcattc 12706344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 32556563 - 32556489
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt-ctaggattggttgtacaaatatcattc 115  Q
    |||||||||||||| ||||||| |||||||||| |||||||| || | | |  ||||||| ||||||||||||||    
T  32556563 tttttatccaataaaaagagagaaaaagtggttatcacaaaagttatacaaaaattggttatacaaatatcattc 32556489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 51377261 - 51377180
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagt-ggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||  ||||||||||||||| ||||   ||||||||| ||| ||||| |||| ||| ||||||||||||||| ||||    
T  51377261 ttgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcaaggaatggatgtacaaatatcattgctct 51377180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 52697584 - 52697656
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||||| |||||| || |||| |||| | ||||||||||| ||||| ||  |||||||||||||||||||    
T  52697584 ttgtttttattcaataaaaatagagaaaaa-tagttgtcacaaagattgtttaaaattggttgtacaaatatca 52697656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 1015092 - 1015160
Alignment:
Q  51 aataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| |||| ||||||||||| ||||||  ||||  |  ||||||||||||||||||||| ||||    
T  1015092 aataagaatagagaaaaagtggttgccacaaaggttgtacaaaattggttgtacaaatatcatttctct 1015160  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 11493242 - 11493270
Alignment:
Q  96 tggttgtacaaatatcattcctctaaaac 124  Q
    |||||||||||||||||||||||||||||    
T  11493242 tggttgtacaaatatcattcctctaaaac 11493270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 16531908 - 16531832
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||| |||||||| ||||   ||||||||||||||||||||||||| ||  |||  ||||||| |||||||| ||||    
T  16531908 ttttgtccaataaaaagaagagaaaagtggttgtcacaaaaattgtttaaaattaattgtacagatatcatttctct 16531832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 14127354 - 14127430
Alignment:
Q  44 tttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  14127354 tttatccaataagaagagaggaaaagtggttgtcacaaaagttgtttaggattggttgtacaaatatcattcctcta 14127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 37568477 - 37568399
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcct 117  Q
    ||||||||||| |||||||| ||| ||||| |||||||||||||| ||||||| | |||||||||||||||||||||||    
T  37568477 ttgtttttatcgaataagaatagatgaaaaatggttgtcacaaaagttgtctaagcttggttgtacaaatatcattcct 37568399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 39199956 - 39199887
Alignment:
Q  46 tatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    ||||||||||||| ||| |||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  39199956 tatccaataagaatagaagaaaagtggttgtcacaaaagttgtttaagattggttgtacaaatatcattc 39199887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 1775414 - 1775490
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||||||||||||| || |||| |||||||||||||| |||| || ||||||| ||||||||||||||||||    
T  1775414 tttttatccaataagaagaaagaaaaaatggttgtcacaaaagttgtttaagattggtggtacaaatatcattcctc 1775490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 4721835 - 4721911
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| ||  ||  ||||||||||||||| |||||    
T  4721835 tttttatccaataagaagagaggaaaagtggttgtctcaaaagttgtttaaaatgagttgtacaaatatcactcctc 4721911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 26629077 - 26628997
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| ||||||||||| | || ||||||||||||||||||  ||||  |  ||||||||||||||||||| ||||||    
T  26629077 ttgtttttgtccaataagaataaagaaaaagtggttgtcacaaatgttgtacaaaattggttgtacaaatatcactcctct 26628997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 33938448 - 33938368
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||| |||||||||||| |||| |  || ||| |||| |||| ||| |||| ||||| |||||||||||||||    
T  33938448 ttgtttttatccgataagaagagagaaaaaataattatcataaaagttgtatagaattgattgtataaatatcattcctct 33938368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 37522042 - 37521971
Alignment:
Q  48 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||| | || |||| ||||||||||||||||||| ||  |||  || ||||||||||||||||||    
T  37522042 tccaataagaataaagaaaaaatggttgtcacaaaaattgtataaaattaattctacaaatatcattcctct 37521971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 3155929 - 3155978
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtcta 91  Q
    |||||||||||||||||| |||||||| |||||||||  ||| |||||||    
T  3155929 tttttatccaataagaagtgaggaaaaatggttgtcaataaagttgtcta 3155978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 28434548 - 28434625
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||| |||||| ||||||||| || |||||||| ||||| |||| ||  ||  ||||||||||||||| ||||||    
T  28434548 tttttattcaataaaaagagaggataaatggttgtctcaaaagttgtttaaaatgagttgtacaaatatcactcctct 28434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 30170700 - 30170627
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||| |||||| | || ||  ||||| |||||||||| |||||||||||  ||| |||||||||||||||    
T  30170700 ttgtttttgtccaatcacaaaaggagaaaaatggttgtcaccaaaattgtctaaaattagttgtacaaatatca 30170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 43066558 - 43066481
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||| |||||||||||||||| |||| ||| | ||||||| |||||  |  ||| ||||||||||||||| |||||||    
T  43066558 ttttgtccaataagaagagagaaaaaatggctatcacaaagattgtacaaaattagttgtacaaatatcactcctcta 43066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 47925440 - 47925519
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47925440 ttgtttttatccgataagaagaaaggaaaagtggttgtcacaaaaattgtctagaattggttgtacaaatatcattcctc 47925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 11503545 - 11503465
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| || ||||| |||||| |||||||||||||||||||    
T  11503545 ttgtttttatccaacaagaagagagaaaaagtggttgtcacaaaagttttctagaattggtcgtacaaatatcattcctct 11503465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 49094704 - 49094641
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgt 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  49094704 ttgtttttatccaataagaaaagaggaaaagtggttgtcacaaaagttgtctaggattggttgt 49094641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 6427316 - 6427395
Alignment:
Q  40 tgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||||||||||| | |||||||||||||||| ||||||||||| |||||||  |||| ||||||||||||||||||||||    
T  6427316 tgtttttatccaaga-gaagagaggaaaagtgcttgtcacaaaagttgtctaaaattgattgtacaaatatcattcctcta 6427395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 6892584 - 6892522
Alignment:
Q  57 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  6892584 aagagagaaaaagttgttgtcacaaaagttgtctatgattggttgtacaaatatcattcctct 6892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 2005731 - 2005657
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcaca-aaaattgtctaggattggttgtacaaatatca 112  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||  ||||  |||||||||||||    
T  2005731 ttgtttttatccaataaaaagagtggaaaagtggttgtcacaaaaaattgtctaaaattgaatgtacaaatatca 2005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 7714804 - 7714730
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 116  Q
    ||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||| ||||||||||| ||||||    
T  7714804 tttttattcaataagaagagagaaaaaatagttgtcacaaaaattgtttagaattgattgtacaaataccattcc 7714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 48314332 - 48314254
Alignment:
Q  40 tgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||| ||||||||| |||||||  ||| ||||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  48314332 tgttttgatccaataaaaagagagagaaaatggttgtcacaaagattgtttaagattgattgtacaaatatcattcctc 48314254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 22588929 - 22588848
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||| |||||| | || ||| |||||||||||||||| ||| |||||||  ||| ||||||||||||||| |||||||    
T  22588929 ttgtttttgtccaatcacaaaagaagaaaagtggttgtcaccaaagttgtctaatattagttgtacaaatatcactcctcta 22588848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 16829652 - 16829573
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||||||||| | |||||  |||||||||||||||| ||| |||| ||  ||| ||||||||||||||| |||||    
T  16829652 ttgtttttatccaatcacaagaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16829573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 48395345 - 48395425
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| ||||||   || ||| |||||||||||||||| || ||||||||  ||| ||||||||||||||| ||||||    
T  48395345 ttgtttttgtccaatctcaaaagaagaaaagtggttgtcaccaagattgtctaatattagttgtacaaatatcaatcctct 48395425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 8352882 - 8352921
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaa 82  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  8352882 ttttgtccaataagaagagagaaaaagtggttgtcacaaa 8352921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 16953999 - 16954078
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||||||||| | || ||  |||||||||||||||| ||| |||| ||  ||| ||||||||||||||| |||||    
T  16953999 ttgtttttatccaatcacaaaaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16954078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 37855085 - 37855155
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| |||| ||  || ||||||||||| ||||    
T  37855085 tttttatccaataagaaaagaggaaaaatggttgtcttaaaagttgtttaaaataggttgtacaaacatca 37855155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 45606953 - 45606995
Alignment:
Q  73 ttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||    
T  45606953 ttgtcacaaaagttgtctaagattggttgtgcaaatatcattc 45606995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 2849483 - 2849446
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcaca 80  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  2849483 ttttgtccaataagaagagagaaaaagtggttgtcaca 2849446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 24957158 - 24957097
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgta 103  Q
    |||||||||||||  || ||||||||||||||||||| ||||  |||||| ||||| |||||    
T  24957158 tttttatccaatataaaaagaggaaaagtggttgtcataaaagctgtctatgattgattgta 24957097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 41750217 - 41750290
Alignment:
Q  48 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 121  Q
    |||||||||||||||||||||  ||||||||| |||||||| |    |||||||| ||||||||  ||||||||    
T  41750217 tccaataagaagagaggaaaaaaggttgtcactaaaattgtttgattttggttgttcaaatatcgctcctctaa 41750290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 42663383 - 42663310
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||| |||||| | |||||  |||||||||||||||| ||| |||||||  ||| | |||||||||||||    
T  42663383 ttgtttttgtccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatca 42663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 45256699 - 45256618
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||| |||||| | || ||  |||||||||||||||| ||| |||||||  ||| | ||||||||||||| |||||||    
T  45256699 ttgtttttgtccaatcacaaaaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcta 45256618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 7212628 - 7212552
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||| || | ||||||  ||||||| ||||||| |||||||||||  | | ||||||||||||||| |||||    
T  7212628 tttttatcctatcacaagagaataaaagtgattgtcaccaaaattgtctaaaactagttgtacaaatatcaatcctc 7212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 23816384 - 23816436
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtcta 91  Q
    ||||||||||||||||| || |||| |||||||||| ||| |||| |||||||    
T  23816384 ttgtttttatccaataaaaaaagagaaaaagtggttttcaaaaaagttgtcta 23816436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 11113982 - 11113902
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  11113982 ttgtttatatccaataagaagagaggaaaagtggttatcacaaaagttgtttaggattggttgtacaaatatcattcctct 11113902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 10840821 - 10840896
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 114  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||||| ||||    
T  10840821 ttgtttttatccaataagaatagagaaaaagtggttgtcacaaaagttgtttagaattggttgtacaaataccatt 10840896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 20029362 - 20029433
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatat 110  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||| |||| |||||||||||||||| ||||    
T  20029362 ttgtttatatccaataagaagagaagaaaagttgttgtcaccaaagttgtataggattggttgtacagatat 20029433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 31204780 - 31204697
Alignment:
Q  37 tgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||| |||| ||| |||||||||||| ||||||||||||||||||  ||||  |  |||| |||||||||||||| |||||||    
T  31204780 tgttgattttgtccgataagaagagagaaaaagtggttgtcacaaaggttgtacaaaattgattgtacaaatatcactcctcta 31204697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 38700 - 38743
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattg 87  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||    
T  38700 tttttatccaataag--gagaggaaaagtggttgtctcaaaaattg 38743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 25109149 - 25109226
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||| ||  ||||||||||||||||| ||||| |||| ||  ||   |||||||||||||| ||||||    
T  25109149 tttttatccaataaaaaaggaggaaaagtggttgtctcaaaagttgtttaaaatgaattgtacaaatatcactcctct 25109226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 34019893 - 34019824
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||| |||||||||||||||| |||||||||| |||||||  ||||  |  ||| |||||||||||||||    
T  34019893 ttttgtccaataagaagagagaaaaagtggttatcacaaaggttgtacaaaattagttgtacaaatatca 34019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 14151730 - 14151652
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcct 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||    
T  14151730 ttgtttttatccaataagaagagaggaaaagtggttgtcaaaaaagttgtctaagattagttgtacaaatatcattcct 14151652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 40106704 - 40106780
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  40106704 tttttattcaataagaagagagaaaaagtggttgtcacaaaagttgtctaggattgattgtacaaatatcattcctc 40106780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 9366017 - 9366098
Alignment:
Q  37 tgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | ||||||| || ||||| ||||||||||||||||||||    
T  9366017 tgttgtttttatccaataagaagagatgaaaagtagttgtcatagaaattgtttatgattgattgtacaaatatcattcctc 9366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 31629707 - 31629788
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||||||||||||||||||||  ||||||||||||||| || ||||||| |||| |||||||||||||||||| ||||    
T  31629707 ttgtttttatccaataagaagagagagaaagtggttgtcacataagttgtctaagattagttgtacaaatatcattcttcta 31629788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 13453919 - 13453839
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 123  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||| ||||| ||||    
T  13453919 ttttgtccaataagaagagagaaaaagtggttgtcacaaaaattgtataaaattggttgtacaaatatcactcctcaaaaa 13453839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 40602354 - 40602273
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaa-gtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||  || |||||||||||||||| |||||||||||||||    
T  40602354 ttgtttttatccaataaaaaaagaggaaaaagtggttgtcacaaatgttatctaggattggttgtataaatatcattcctct 40602273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 30416466 - 30416547
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||||||| |||||||| || |||  |||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  30416466 ttgtttttgtccaataaaaaaagaaaaaaaatggttgtcacaaaaattgtctaagatttgttttacaaatatcattcctcta 30416547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 30415117 - 30415193
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    |||||||| |||||||| || |||| |||| |||||||||||||| |||||||  ||| ||||||||||||||||||    
T  30415117 ttgtttttgtccaataataaaagagaaaaaatggttgtcacaaaagttgtctaaaatttgttgtacaaatatcattc 30415193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 39233702 - 39233641
Alignment:
Q  58 agagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||| || |||||||||||||||||||  |||  |||||||||||||||||||||    
T  39233702 agagaggaaaaatgattgtcacaaaaattgtctaaaattaattgtacaaatatcattcctct 39233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 45376184 - 45376107
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||||||| ||| ||||||||||||||||||  |||| ||  | | ||||||||||||||| ||||||    
T  45376184 tttttatccaataagaagtgagaaaaagtggttgtcacaaaggttgtttaaaactagttgtacaaatatcactcctct 45376107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 28544129 - 28544175
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt 88  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  28544129 tttttatccaataaaaagagagaaaaagtggttgtcacaaaagttgt 28544175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 43820700 - 43820636
Alignment:
Q  48 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    ||||||||||| | || |||||||||||||||||| ||| | ||  |||||||||||||||||||    
T  43820700 tccaataagaataaagaaaaagtggttgtcacaaagattatataaaattggttgtacaaatatca 43820636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 15123900 - 15123825
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 114  Q
    |||||||| |||||| | |||||  |||||||||||||||| |||||| || |  ||| |||||||||||||||||    
T  15123900 ttgtttttctccaatcataagaggagaaaagtggttgtcaccaaaattatcaaatattagttgtacaaatatcatt 15123825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 22966893 - 22966968
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||| |||||||||||||||| ||| ||| ||||||||||  ||||  |  ||||||||||||||||||| |||||    
T  22966893 ttttgtccaataagaagagagaaaatgtgattgtcacaaaggttgtacaaaattggttgtacaaatatcactcctc 22966968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 15610802 - 15610725
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 116  Q
    |||||||| |||||||| || |||| |||| || ||||||||||  ||||  |  |||||||||||||||||||||||    
T  15610802 ttgtttttgtccaataaaaatagagaaaaaatgtttgtcacaaaggttgtacaaaattggttgtacaaatatcattcc 15610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 32900294 - 32900221
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    ||||| ||||||||||| |||||||||||| ||| | |||||||  ||||| |  ||| |||||||||||||||    
T  32900294 ttgttcttatccaataaaaagagaggaaaattggctatcacaaatgttgtccaaaattagttgtacaaatatca 32900221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 34432465 - 34432392
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||| |||||||| || |||| |||| ||||||||| |||| ||||  |  |||||||||||||||||||    
T  34432465 ttgtttttgtccaataaaaatagagaaaaaatggttgtcaaaaaagttgtacaaaattggttgtacaaatatca 34432392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 37966391 - 37966358
Alignment:
Q  94 attggttgtacaaatatcattcctctaaaactat 127  Q
    ||||||||||||||||||||| ||||||||||||    
T  37966391 attggttgtacaaatatcatttctctaaaactat 37966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 37468214 - 37468158
Alignment:
Q  57 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcat 113  Q
    ||||||||||||  ||||||||||||| |||| |   ||||||||||||||||||||    
T  37468214 aagagaggaaaaaaggttgtcacaaaagttgtttcaaattggttgtacaaatatcat 37468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 5740449 - 5740525
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  5740449 ttgtttttatccaataagaagagaagaaaagtgattgtcacaaaagttgtttaggattggttgtacaaatatcattc 5740525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 35474483 - 35474563
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||||||  |  |||  |||||||||||||||||||||    
T  35474483 ttgtttttgtccaataaaaatagagaaaaagtggttgtcacaaaaattgtacaaaattaattgtacaaatatcattcctct 35474563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 35570916 - 35570994
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||||||||||||||||||||||||| || ||||| ||||| |||| ||  ||  ||||||||||||||| |||||||    
T  35570916 tttttatccaataagaagagaggaaaaatgattgtctcaaaagttgtttaaaataagttgtacaaatatcactcctcta 35570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 5899854 - 5899770
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 123  Q
    ||||| ||||||||||||||||||||||||  ||| ||||| |||||||| |    ||||||||  |||||||||||||||||||    
T  5899854 ttgttattatccaataagaagagaggaaaaaaggtagtcactaaaattgtttgattttggttgtcaaaatatcattcctctaaaa 5899770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 26754603 - 26754527
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||||||||||||||||||||||||  ||||  |||| |||| ||  ||  ||||||||||||||| |||||    
T  26754603 tttttatccaataagaagagaggaaaagtgaatgtcttaaaagttgtttaaaatgagttgtacaaatatcactcctc 26754527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 4800461 - 4800387
Alignment:
Q  46 tatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||||||||||||||||||||| || ||||||| | | |||||||   || ||| ||||||||||| |||||||    
T  4800461 tatccaataagaagagaggaaaaatgattgtcactatagttgtctaaatttagttatacaaatatcactcctcta 4800387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 35475920 - 35475990
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    ||||| || |||||||| |||| |||||||||||||| ||||||||| ||  ||| ||| |||||||||||    
T  35475920 tttttgtctaataagaatagagaaaaagtggttgtcaaaaaaattgtataaaattagttatacaaatatca 35475990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 844136 - 844216
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| |||||| | || ||  |||||||| ||||||| ||| |||||||  ||| ||||||||||||||| ||||||    
T  844136 ttgtttttgtccaatcacaaaaggagaaaagtgattgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 30838333 - 30838253
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||| |||||  ||||||| ||||| |||| | ||||  |  ||||| ||||||||||||| ||||||    
T  30838333 ttgtttttatccaataaaaagaggagaaaagtagttgtaacaagagttgtacaaaattggctgtacaaatatcactcctct 30838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 38017888 - 38017806
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 121  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| | | |||||||||||||||||||    
T  38017888 ttgtttttatccaataagaagagagaaaaagtgattgtcacaaaaattgtctaagattgatcggacaaatatcattcctctaa 38017806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 47187488 - 47187408
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||| ||| |||  |||||||||||||||||||||    
T  47187488 ttgtttttatccagtaagaagagatgaaaagtggttgtcacaaaagttgtttagaattaattgtacaaatatcattcctct 47187408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 202101 - 202152
Alignment:
Q  283 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202101 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 202152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 38910567 - 38910491
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    |||||||||||||||||||| |||||||||    |||||||||||||| | ||  ||||||||||||||||||||||    
T  38910567 ttgtttttatccaataagaatagaggaaaaaatattgtcacaaaaattatttaaaattggttgtacaaatatcattc 38910491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 207022 - 206947
Alignment:
Q  260 ctttctatttagtattaatgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 334  Q
    ||||||||||||| ||  | |||||||| |||| |||||||||||||| | |||||||||||||||||||||||||    
T  207022 ctttctatttagtcttgttcaaatatgtctgggcatggatgataatgttattttttggtttcatagggttgggagg 206947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 6977017 - 6977093
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    |||||||||||||||||||| ||||||||| || || |||||||| ||||  | ||||  |||||||||||||||||    
T  6977017 ttgtttttatccaataagaaaagaggaaaaatgattatcacaaaagttgttcaagatttattgtacaaatatcattc 6977093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 37073760 - 37073842
Alignment:
Q  38 gttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    ||||||||| |||||||| |||||  |||||||| |  |||| |||||| ||||  ||| |||||||||||||||||||||||    
T  37073760 gttgtttttgtccaataacaagagcagaaaagtgatgatcaccaaaattatctaatattagttgtacaaatatcattcctcta 37073842  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 39901693 - 39901763
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 112  Q
    |||||||||||||||||||||| ||||||||||| ||| ||| |||| ||  ||||| |||||| ||||||    
T  39901693 tttttatccaataagaagagagaaaaagtggttgccaccaaagttgtttaaaattggatgtacatatatca 39901763  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 34103044 - 34102964
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||| | || ||| ||||||| |||||| ||||||||||||||||| ||  |||| || || |||||||||||||||    
T  34103044 ttgtttttgttcattaaaaagagagaaaaagtagttgtcacaaaaattgtttaaaattgattatataaatatcattcctct 34102964  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 41851047 - 41851123
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||| ||||| |||| ||||||||||||||||| |||| |||| |   |||||||||| ||||| ||||||||    
T  41851047 tttttatctaataaaaagaaaggaaaagtggttgtcataaaatttgtttgcaattggttgtataaataacattcctc 41851123  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 41448150 - 41448071
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||| ||| |||| ||||||| |||| || ||||||||||| |||||||  |||| ||||  ||||||||||||||    
T  41448150 ttgtttttgtccgataaaaagagagaaaaaatgattgtcacaaaagttgtctaaaattgattgtgtaaatatcattcctc 41448071  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 48335318 - 48335397
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 121  Q
    |||||||||||||| |||| || ||||||| || |||||||| |||||||   |||| ||||||||||||| | ||||||    
T  48335318 tttttatccaataaaaagaaagaaaaagtgattatcacaaaagttgtctaaagttggatgtacaaatatcacttctctaa 48335397  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 9326953 - 9326871
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 121  Q
    |||||||| |||||| | |||||  |||||||||||||||| ||| |||||||  |||   ||||||||||||| ||||||||    
T  9326953 ttgtttttttccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattatatgtacaaatatcaatcctctaa 9326871  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 19961978 - 19961921
Alignment:
Q  72 gttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaactatac 129  Q
    ||||||||||||||||||||  | ||||||| ||||||||||| |||||  |||||||    
T  19961978 gttgtcacaaaaattgtctaaaagtggttgttcaaatatcatttctctactactatac 19961921  T

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Target: scaffold1625 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 744 - 669
Alignment:
Q  44 tttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||    
T  744 tttatccaataagaagaaaggaaaagtggttgtcacaaaagttgtttagaattgcttgtacaaatatcattcctct 669  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 29514286 - 29514345
Alignment:
Q  275 taatgaaatatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29514286 taatgaaatatgtttgggaatggatgataatgtcatttttggtttcacagggttgggagg 29514345  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 43891745 - 43891666
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    |||||||||| ||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||| ||||||    
T  43891745 ttgtttttattcaataagaagagaggaaaagtgactgtcacaaaagttgtttaggattggttgtacaaatatcgttcctc 43891666  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 40809604 - 40809670
Alignment:
Q  53 taagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  40809604 taagaagagaggaaaagtggttgtcacaatagttgtttaggattggttgtacaaatatcattcctct 40809670  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 49804903 - 49804826
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 116  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| || | ||| |||||||||||||||||||||||    
T  49804903 ttgtttttatccaataaaaagagaggaaaagtggttgttacaaaagttatttagaattggttgtacaaatatcattcc 49804826  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 28501550 - 28501628
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 118  Q
    ||||||||||||||||| |||| ||||||| || || |||||||| |||| |||||||||||||||||||||||||||||    
T  28501550 ttgtttttatccaataa-aagaaaggaaaaatgattatcacaaaagttgtttaggattggttgtacaaatatcattcctc 28501628  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 27804796 - 27804719
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 120  Q
    |||| |||||||| || |||| |||||||||||||||||| ||||| ||  ||||||||||||||||||| |||||||    
T  27804796 ttttgtccaataaaaatagagaaaaagtggttgtcacaaagattgtgtaaaattggttgtacaaatatcactcctcta 27804719  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 12021864 - 12021781
Alignment:
Q  42 tttttatccaataagaagagaggaaaagt--ggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 123  Q
    |||||||||||||| |||||||||||| |  ||||||| || || || || | |||||||||||||||||||||||||| ||||    
T  12021864 tttttatccaataaaaagagaggaaaattatggttgtcgcacaatttatccaagattggttgtacaaatatcattcctcaaaaa 12021781  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 51231274 - 51231199
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 115  Q
    ||||||||||||| ||| || |||| ||||||||||| | |||||||| ||||| ||||||||||||||||| ||||    
T  51231274 ttgtttttatccattaaaaa-agagaaaaagtggttgactcaaaaattatctagaattggttgtacaaatataattc 51231199  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 43625995 - 43626052
Alignment:
Q  278 tgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 334  Q
    ||||||| ||||||| |||||||||||||||| |||||| |||||||||||| |||||    
T  43625995 tgaaatacgtttggggatggatgataatgtcattttttgatttcatagggttaggagg 43626052  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 3904285 - 3904369
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 123  Q
    |||||||| |||||| | |||||  ||||| |||||||||  |||||||||||   || ||||||||||||||| ||||||||||    
T  3904285 ttgtttttgtccaatcacaagaggagaaaattggttgtcatcaaaattgtctaattttagttgtacaaatatcactcctctaaaa 3904369  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 35883571 - 35883504
Alignment:
Q  43 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatat 110  Q
    |||| |||||||| ||||||| ||||||||||||||||||  ||||  |  |||||||||||||||||    
T  35883571 ttttgtccaataaaaagagagaaaaagtggttgtcacaaaggttgtacaaaattggttgtacaaatat 35883504  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 38519951 - 38519880
Alignment:
Q  48 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    ||||||||||| | || ||||||| |||||||||| ||| | ||  ||||||||||||||||||| ||||||    
T  38519951 tccaataagaataaagaaaaagtgattgtcacaaagattatataaaattggttgtacaaatatcactcctct 38519880  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 2533264 - 2533236
Alignment:
Q  94 attggttgtacaaatatcattcctctaaa 122  Q
    |||||||||||||||||||||||||||||    
T  2533264 attggttgtacaaatatcattcctctaaa 2533236  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 34453440 - 34453371
Alignment:
Q  42 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt-ctaggattggttgtacaaatatca 112  Q
    ||||||||||||||  ||||||  ||||||||||||||||||||||| | |  |||||||||| ||||||||    
T  34453440 tttttatccaataaatagagag--aaagtggttgtcacaaaaattgtacaaaaattggttgtataaatatca 34453371  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 50777391 - 50777315
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaa-gtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 114  Q
    ||||||||| ||||||||||||||| ||||   ||||||||| |||||||||    ||||| |||||||||||||||    
T  50777391 ttgtttttaaccaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcatt 50777315  T

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Target: scaffold0295 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 6111 - 6031
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||| ||  ||||| ||||||||||||| ||||||    
T  6111 ttgtttttatccaataagaagagaggaaaaatggttgtcacaaatgttgtttaaaattggatgtacaaatatcactcctct 6031  T

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Target: scaffold0295; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 3626 - 3546
Alignment:
Q  39 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 119  Q
    |||||||||||||||||||||||||||||| ||| | |||||||  |||| ||  ||||  ||||||||||||| ||||||    
T  3626 ttgtttttatccaataagaagagaggaaaaatgggtatcacaaatgttgtttaaaattgaatgtacaaatatcactcctct 3546  T

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