View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_18 (Length: 294)
Name: NF20339_low_18
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 31245376 - 31245522
Alignment:
| Q |
18 |
agacttcgaatttcagccggggaaagaccagttggtggtggtctgaaggtattattagcttcatgccactcttctttcatttcaacttcaactatatcag |
117 |
Q |
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| T |
31245376 |
agacttcgaatttcagccggggaaagaccagttggtggtggtctgaaggtattattagcttcatgccactcttctttcatttcaactttaactatatcag |
31245475 |
T |
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| Q |
118 |
ctacattattagcaatggatccacagatttcacaagttctgtaaatt |
164 |
Q |
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| T |
31245476 |
ctacattattagcaatggatccacagatttcacaagttctgtaaatt |
31245522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 31245520 - 31245587
Alignment:
| Q |
211 |
attttaataacaaaaatttaaacacatgtaatccaattagaagtattaacttgtataccaacaacttg |
278 |
Q |
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| T |
31245520 |
attttaataacaaaaatttaaacacatgtaatccaattagaagtattaacttgtataccaacaacttg |
31245587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 31219908 - 31220006
Alignment:
| Q |
71 |
attagcttcatgccactcttctttcatttcaacttcaactatatcagctacattattagcaatggatccacagatttcacaagttctgtaaattgtaca |
169 |
Q |
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| T |
31219908 |
attagcttcactccactgttctgtcatttcaacttcaactataccagatacatttctagcaatggatccacagatttcacaagttctgtaaattgtaca |
31220006 |
T |
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