View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_20 (Length: 277)
Name: NF20339_low_20
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35354579 - 35354339
Alignment:
| Q |
1 |
caaagtgaaccaggacaagttcttgataacagcatttcaacagtactgtaaaaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaa |
100 |
Q |
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| T |
35354579 |
caaagtgaaccaggacaagttcttgataacagcatttcaacagtactgtaaaaagatgaaattgcaatatgccaccatcaactttctgcttgatgagaaa |
35354480 |
T |
|
| Q |
101 |
tctattcaaggaaatcgtcaaacaccaaagatggttagtttcttcttgctttctcacattttccttcatttctagaataaaccgaatgttgtaaatagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35354479 |
tctattcaaggaaatcgtcaaacaccaaagatggttagtttcttcttgctttctcacattttccttcatttctagaaaaaaccgaatgttgtaaatagct |
35354380 |
T |
|
| Q |
201 |
aaacacattctg-----taaaagctctagaaatattaagta |
236 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
35354379 |
aaacacattctgtaatataaaagctctagaaatattaagta |
35354339 |
T |
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