View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_23 (Length: 263)
Name: NF20339_low_23
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 8004441 - 8004678
Alignment:
| Q |
14 |
atcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacac |
113 |
Q |
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| T |
8004441 |
atcattgcttaccgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacac |
8004540 |
T |
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| Q |
114 |
acgttaaaattaaaaaattatgttctctctggtggtacttgttcgtatgatatgtctaatctaattactgttgcagcatcttgatatcacatttagaaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8004541 |
acgttaaaattaaaaaattatgttctctctggtggtacttgttcgtatgatatgtctaatctaatcactgttgcagcatcttgatatcacatttagaaga |
8004640 |
T |
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| Q |
214 |
gacccaactaattttcgcccaaggatcaacaaacttga |
251 |
Q |
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| T |
8004641 |
gacccaactaattttcgcccaaggatcaacaaacttga |
8004678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 7900664 - 7900522
Alignment:
| Q |
14 |
atcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacac |
113 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
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| T |
7900664 |
atcactgcttactgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgtccctttttaaaaatttagggtatcatgc |
7900565 |
T |
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| Q |
114 |
acgttaaaattaaaaaatta---tgttctctctggtggtactt |
153 |
Q |
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| T |
7900564 |
atgttaaaatttaaaaattatgttgttctctctggtggtactt |
7900522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 51518878 - 51518971
Alignment:
| Q |
158 |
gtatgatatgtctaatctaattactgttgcagcatcttgatatcacatttagaagagacccaactaattttcgcccaaggatcaacaaacttga |
251 |
Q |
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| T |
51518878 |
gtatgatatgtctaatctaatcactgttgcagcatcttgatatcacatttagaagagacccaactaatttccgcccaaggatcaacaaacttga |
51518971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 51518761 - 51518882
Alignment:
| Q |
14 |
atcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagggtatcacac |
113 |
Q |
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||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
51518761 |
atcattgctgaccgggatgaaccttttcttatctgtaagtgtcgttgtttttcaatggtttcattaattcattccgttttaaaaatttagggtatcacga |
51518860 |
T |
|
| Q |
114 |
acgttaaaattaaaaaattatg |
135 |
Q |
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| T |
51518861 |
aagttaaaatttaaaaagtatg |
51518882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 1300411 - 1300180
Alignment:
| Q |
14 |
atcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagg--gtatcac |
111 |
Q |
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|||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
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| T |
1300411 |
atcactgctgactgggatgaaccttttcttatcagtaagtgtcattgtttttcaatggtttcgtta----------ttttaaaaataattgaagtatcat |
1300322 |
T |
|
| Q |
112 |
acacgttaaaattaaaaaattatgttct-ctctggtggtacttgttcgtatgatatgtctaatctaattactgttgcagcatcttgatatcacatttaga |
210 |
Q |
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|| ||||||||| |||||||||||| | |||| |||||||||| | ||| | ||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
1300321 |
gcatgttaaaatttaaaaattatgttttgctctcgtggtacttgcttgtaataaatgtctaatgtaataatcgttgcagcatcttgatatcacatttaga |
1300222 |
T |
|
| Q |
211 |
agagacccaactaattttcgcccaaggatcaacaaacttgat |
252 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
1300221 |
agagatccaactaatttccgcccaaggatcaacaaacttgat |
1300180 |
T |
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