View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_25 (Length: 250)
Name: NF20339_low_25
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 50548836 - 50549058
Alignment:
| Q |
18 |
taaggtatggagggtataccactaaaaatcaaaataatttaaagaaagactaattagatgcattaagattattgtttacacaaaaagattttctatcaca |
117 |
Q |
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| T |
50548836 |
taaggtatggagggtataccactaaaaatctaaataatttaaagaaagactaattagatgcattaagattattgtttacacaaaaagatttgctatcaca |
50548935 |
T |
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| Q |
118 |
tacttgaaaacaaccaaaatacttccaactgcagttaattaccattcattctgaaagaaaaattaaacaatgaacggcaattgactatcgttagagatat |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||| |
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| T |
50548936 |
tacttgaaaacagccaaaatacttccaactgcagttaattaccattcattctgaaagaaaaattaaacaacggacgacaattgactatcgttggagatat |
50549035 |
T |
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| Q |
218 |
tgaagatcatttgcaggtctgtg |
240 |
Q |
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| T |
50549036 |
tgaaggtcatttgcaggtctgtg |
50549058 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 5672837 - 5672762
Alignment:
| Q |
82 |
aagattattgtttacacaaaaagattttctatcacatacttgaaaacaaccaaaatacttccaactgcagttaatt |
157 |
Q |
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|||||| || ||||||| ||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
5672837 |
aagattgttatttacactaaaagatttgttatcacatatctgaaaatgaccaaaatacttccaacagcagttaatt |
5672762 |
T |
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