View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_27 (Length: 246)
Name: NF20339_low_27
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 17783956 - 17783716
Alignment:
| Q |
6 |
agataattcttgtgttttctgtaatgagcatcttgaatcggctagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttagg |
105 |
Q |
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| T |
17783956 |
agatacttcttgtgttttctgtaatgagcatcatgaatcggcttgtcacttttttgctagatgtcattttttaggtcggatgtggtatcatgtgcttagg |
17783857 |
T |
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| Q |
106 |
tagttgaggtgggagtttgttttacctccagatgtagtcatcgctacatcttcttagtattatgttagaattaggtgcatnnnnnnnncgaggttgaann |
205 |
Q |
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| T |
17783856 |
tagttgaggtgggagtttgttttacctccagatgtagtcatcgctgcatcttcttagtattatattagaattaggtgcagaaaaaaaacgaggttgaatt |
17783757 |
T |
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| Q |
206 |
nnnnnaacgtggaaaattattatgtggtccttgtagagatc |
246 |
Q |
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| T |
17783756 |
tttttaacgtggaaaatcattatgtggttcttgtagagatc |
17783716 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 30970806 - 30970755
Alignment:
| Q |
81 |
tcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttacct |
132 |
Q |
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| T |
30970806 |
tcaggtgtagtatcatgtgtttaggtagttggggtgggagttagttttacct |
30970755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 34391061 - 34391156
Alignment:
| Q |
43 |
tcggctagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttacctccagat |
138 |
Q |
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| T |
34391061 |
tcggttagtcacctttttgttagttgtccttttttaggctaggtgtggtatcatgtgcttaggtggttggggtgggagtttgttttaccttcagat |
34391156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 6429534 - 6429449
Alignment:
| Q |
50 |
gtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttacctcca |
135 |
Q |
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| T |
6429534 |
gtcacctttttgctagatgtcattttttaagtcaggtgtggtatcgtgtgcttaggtggttggggggagagtttgttttacctcca |
6429449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 30869734 - 30869825
Alignment:
| Q |
15 |
ttgtgttttctgtaatgagcatcttgaatcggctagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggt |
106 |
Q |
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| T |
30869734 |
ttgtgttttttgtaatgagagtgtagagttggcttgtcacctttttgttagatgtcagtttttaggtcaggtgtggtagcatgtgtttaggt |
30869825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 22341119 - 22341218
Alignment:
| Q |
12 |
ttcttgtgttttctgtaatgagcatcttgaatcggctagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttg |
111 |
Q |
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| T |
22341119 |
ttcttgtgttttctataatgagcctatagagtcgggttgtcacatttttgttagatgtccttttttagatcaggtatggtatcatgtgcttatgtagttg |
22341218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 5873710 - 5873644
Alignment:
| Q |
12 |
ttcttgtgttttctgtaatgagcatcttgaatcggctagtcacctttttggtagatttcatttttta |
78 |
Q |
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| T |
5873710 |
ttcttgtgttttctataatgagtttctagagtcgactaatcacctttttgttagatgtcatttttta |
5873644 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 23971594 - 23971710
Alignment:
| Q |
16 |
tgtgttttctgtaatgagcatcttgaatcggctagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggt |
115 |
Q |
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| T |
23971594 |
tgtgttttctgtaatgagcatgtatagttggtttgtcacgtttttgttagataccattttttagaccaggtgtggtatcatgtgttttggaggttggggt |
23971693 |
T |
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| Q |
116 |
gggagtttgttttacct |
132 |
Q |
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| T |
23971694 |
gagagtttgttttacct |
23971710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 22059875 - 22059965
Alignment:
| Q |
48 |
tagtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttacctccagat |
138 |
Q |
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| T |
22059875 |
tagtcacctttttgttagatgtcatttttaaggcgaggtgtggtatcatgtgtttgggtggttggggtgagagtttattttaccttcagat |
22059965 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 7808467 - 7808387
Alignment:
| Q |
50 |
gtcacctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttac |
130 |
Q |
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| T |
7808467 |
gtcacctttttggtagatgtccttttttaggctaagtgttgtatcatgtgtttagatagttggggtgggaatttgttttac |
7808387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 26255544 - 26255460
Alignment:
| Q |
54 |
cctttttggtagatttcattttttagatcagatgtggtatcatgtgcttaggtagttgaggtgggagtttgttttacctccagat |
138 |
Q |
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| T |
26255544 |
cctttttgttagatgtccttttttgggtcaagtgtggtatcatgtgtttagatggttggggtgggtgtttgttttaccttcagat |
26255460 |
T |
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