View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_30 (Length: 241)
Name: NF20339_low_30
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 35709166 - 35709378
Alignment:
| Q |
19 |
ccttatgagtcattaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaacctagtttggtatatatgaataat |
118 |
Q |
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| T |
35709166 |
ccttatgagtctttaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaacctagtttggtatatatgaataat |
35709265 |
T |
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| Q |
119 |
caaatgtgatgtttatctttggttcttaatagcacaggagttcttttatatttatcaagaataaagatgcaaattatatacatttatcttgtacctattg |
218 |
Q |
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| T |
35709266 |
caaatgtgatgtttatctttggttcttaatagcacaggagttcttttatatttatcaagaataaagatgcaaattatatacatttatcttgtacctattg |
35709365 |
T |
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| Q |
219 |
tttattctgacct |
231 |
Q |
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| T |
35709366 |
tttattctgacct |
35709378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 35725069 - 35725156
Alignment:
| Q |
19 |
ccttatgagtcattaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaacctagtttggta |
106 |
Q |
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| T |
35725069 |
ccttatgagtccttaaagccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccatttaaacctagtgtggta |
35725156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 35725640 - 35725585
Alignment:
| Q |
37 |
ccattttcagggcctggagtcactggaaaaggagtcccatacagcatatccattta |
92 |
Q |
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| T |
35725640 |
ccattttcaggacctggagtcactggaaaaggagttccatatagcatatctattta |
35725585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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