View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20339_low_6 (Length: 471)

Name: NF20339_low_6
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20339_low_6
NF20339_low_6
[»] chr8 (2 HSPs)
chr8 (1-452)||(43164628-43165079)
chr8 (2-435)||(41310951-41311384)
[»] chr7 (10 HSPs)
chr7 (2-370)||(30165608-30165964)
chr7 (187-421)||(30125090-30125324)
chr7 (181-296)||(28180965-28181080)
chr7 (191-321)||(30131048-30131178)
chr7 (190-313)||(30120047-30120170)
chr7 (44-105)||(30119904-30119965)
chr7 (63-113)||(30130917-30130967)
chr7 (389-434)||(28180514-28180559)
chr7 (350-432)||(30131210-30131292)
chr7 (350-434)||(30120207-30120291)
[»] chr2 (3 HSPs)
chr2 (193-429)||(21426470-21426706)
chr2 (350-434)||(21430161-21430244)
chr2 (63-113)||(21426789-21426839)
[»] scaffold1051 (1 HSPs)
scaffold1051 (351-419)||(1971-2039)
[»] chr4 (1 HSPs)
chr4 (389-417)||(45366195-45366223)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 43164628 - 43165079
Alignment:
Q  1 catttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattaccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43164628 catttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattcttgcattaccca 43164727  T
Q  101 tatcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactataaaaatcatct 200  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164728 tatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactataaaaatcatct 43164827  T
Q  201 ggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164828 ggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccat 43164927  T
Q  301 tcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164928 tcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaa 43165027  T
Q  401 tgagaaaatctccaagtcaatcgaactagataccaatggatgatattcatag 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165028 tgagaaaatctccaagtcaatcgaactagataccaatggatgatattcatag 43165079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 435
Target Start/End: Original strand, 41310951 - 41311384
Alignment:
Q  2 atttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattacccat 101  Q
    |||||||||||||| ||||||||| || ||| | || | ||||||||||||||||||||| |||||||||||||| |  |||||||||||||| ||||||    
T  41310951 atttgtaaagcataatggggaaaactccggatcggggtgaaaagaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattcttgcatcacccat 41311050  T
Q  102 atcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactataaaaatcatctg 201  Q
    ||||||||||||| |||||||||||||||| | || ||||| | || || ||||| |||||||||||   | | |||  |||||||||||||| ||||||    
T  41311051 atcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaatcactataaaaaccatctg 41311150  T
Q  202 gaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccatt 301  Q
    | |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || |||||||||||||||||||||||||||    
T  41311151 ggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccatt 41311250  T
Q  302 caagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaat 401  Q
    |||||||||||| ||||||||| |||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  41311251 caagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaat 41311350  T
Q  402 gagaaaatctccaagtcaatcgaactagatacca 435  Q
    |||||||||||||||||||| |||||||||||||    
T  41311351 gagaaaatctccaagtcaattgaactagatacca 41311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 2 - 370
Target Start/End: Complemental strand, 30165964 - 30165608
Alignment:
Q  2 atttgtaaagcatactggggaaaaatctggagcaggatcaaaagaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattacccat 101  Q
    |||||||||||||| ||| ||||||||  ||| ||||| |||||||||||||| |||| | ||||||||||||||||| |||||||||||||| ||||||    
T  30165964 atttgtaaagcatattggagaaaaatccagaggaggatgaaaagaaaaatcaagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccat 30165865  T
Q  102 atcttaagtgtagacatctccatattccattcgctgataagcccgcgaagtaccaacaaatcataaaggttgggagaaaaatcactataaaaatcatctg 201  Q
    ||||||| ||||||| |||||| ||||||| | |||||||| ||  ||| |||||||||||||||||  ||           ||| | || |||||| ||    
T  30165864 atcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaa--ttc----------cacgagaacaatcatttg 30165777  T
Q  202 gaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccatt 301  Q
    ||||||| ||||||| |||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  30165776 gaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaaccatt 30165677  T
Q  302 caagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaa 370  Q
     ||||||||||| ||||||||| |||||||||  | | |||  |||| ||||||||||| |||||||||    
T  30165676 gaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 187 - 421
Target Start/End: Original strand, 30125090 - 30125324
Alignment:
Q  187 tataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagcca 286  Q
    |||||||||||| ||||||||| || ||||||||||||  ||||||||||||| |||||| |||||||||  | |  ||||||| ||||| |||||||||    
T  30125090 tataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagcca 30125189  T
Q  287 atgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccat 386  Q
    ||||||||  |||||||||||| |||| ||||||||    || | ||  |   ||||||||| ||||||||||| |||||||||||||||||  |||||     
T  30125190 atgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcctcccac 30125289  T
Q  387 tcattagctctcaatgagaaaatctccaagtcaat 421  Q
    | |||||||||||||| ||||||||||||||||||    
T  30125290 ttattagctctcaatgggaaaatctccaagtcaat 30125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
Q  181 aatcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaac 280  Q
    |||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||||||| | ||||  |||||||||||||||||    
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac 28181064  T
Q  281 cagccaatgaatagaa 296  Q
    ||||||||||||||||    
T  28181065 cagccaatgaatagaa 28181080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 30131048 - 30131178
Alignment:
Q  191 aaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatga 290  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||||| | |||| |||||||||||  ||   |||||||||||||||||||||||||||    
T  30131048 aaaatcatttggaagagttatctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatga 30131147  T
Q  291 atagaaccattcaagaacgacccgactctgg 321  Q
    ||||  |||||||||||| ||||||||||||    
T  30131148 atagccccattcaagaacaacccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 30120047 - 30120170
Alignment:
Q  190 aaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatg 289  Q
    ||||||| | ||| ||||| |||||||| |||||| |||||||||||||| |||||||||||||||  || |  ||||||| ||||| ||||| ||||||    
T  30120047 aaaaatcctttggcagagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatg 30120146  T
Q  290 aatagaaccattcaagaacgaccc 313  Q
    |||||  |||||||||||| ||||    
T  30120147 aatagccccattcaagaacaaccc 30120170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 30119904 - 30119965
Alignment:
Q  44 agaaaaatcaaaagtcttggtccaagatgaatgcacggcgtattcttgcattacccatatct 105  Q
    ||||||| ||| ||||||  |||||||||||||||| || ||||||||||||||||||||||    
T  30119904 agaaaaaacaagagtcttaatccaagatgaatgcactgcatattcttgcattacccatatct 30119965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 30130917 - 30130967
Alignment:
Q  63 gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta 113  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||    
T  30130917 gtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  389 attagctctcaatgagaaaatctccaagtcaatcgaactagatacc 434  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 432
Target Start/End: Original strand, 30131210 - 30131292
Alignment:
Q  350 ataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagata 432  Q
    ||||||||||| |||| ||| || ||||||||  ||   | |||||||||||||||||||| |||||||||  ||||||||||    
T  30131210 ataaggcaaatgagaagcaacctgaatttgttttcagctaatagctctcaatgagaaaatccccaagtcaagtgaactagata 30131292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 30120207 - 30120291
Alignment:
Q  350 ataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacc 434  Q
    |||||| |||| | || ||| ||||| ||||| ||| | ||||| ||||||||||||||||||||||  |||| ||| |||||||    
T  30120207 ataaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaatctccaaggtaatcaaaccagatacc 30120291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 193 - 429
Target Start/End: Complemental strand, 21426706 - 21426470
Alignment:
Q  193 aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaat 292  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||  |||||||||||||||    |  |||||| |||||| |||||||||||||||    
T  21426706 aatcatctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat 21426607  T
Q  293 agaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcatta 392  Q
    ||  ||||| ||||||||||||||||||||   |  ||||      |||||| |   ||||||||||| |||| ||| ||||||||||| ||||| || |    
T  21426606 agccccatttaagaacgacccgactctgggccgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatga 21426507  T
Q  393 gctctcaatgagaaaatctccaagtcaatcgaactag 429  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  21426506 gctctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  350 ataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacc 434  Q
    ||||||||||| |||| ||| |||||||| |||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 21426839 - 21426789
Alignment:
Q  63 gtccaagatgaatgcacggcgtattcttgcattacccatatcttaagtgta 113  Q
    |||||||||||||| || |||||||||||||| | ||||||||||| ||||    
T  21426839 gtccaagatgaatggacagcgtattcttgcatcatccatatcttaattgta 21426789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  351 taaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtca 419  Q
    |||||||||  |||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 417
Target Start/End: Original strand, 45366195 - 45366223
Alignment:
Q  389 attagctctcaatgagaaaatctccaagt 417  Q
    |||||||||||||||||||||||||||||    
T  45366195 attagctctcaatgagaaaatctccaagt 45366223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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