View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20339_low_7 (Length: 463)

Name: NF20339_low_7
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20339_low_7
NF20339_low_7
[»] chr5 (10 HSPs)
chr5 (296-457)||(3379876-3380036)
chr5 (275-352)||(3403224-3403300)
chr5 (275-352)||(3401854-3401930)
chr5 (19-145)||(3369002-3369125)
chr5 (198-271)||(3377823-3377895)
chr5 (19-71)||(3403005-3403057)
chr5 (275-352)||(3377933-3378009)
chr5 (345-394)||(3369196-3369245)
chr5 (295-352)||(3373740-3373796)
chr5 (345-394)||(3394813-3394862)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 296 - 457
Target Start/End: Original strand, 3379876 - 3380036
Alignment:
Q  296 tgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggtaatggcaattacttctcttgcaagggaacaacataagcagaaga 395  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  3379876 tgacaagtttattcaattctaattactcttt-ccaatggattgatatgtgtcaggtaacagtgattacttctcttgcaagggaacaacataagcagaaga 3379974  T
Q  396 atgatccagataaagatactagaaataactcaattgaccttaatttatagggcttcatctca 457  Q
    |||||||||||||| | || ||  |||||||||||||||||||||| |||||||||||||||    
T  3379975 atgatccagataaacaaacaagccataactcaattgaccttaatttgtagggcttcatctca 3380036  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 3403224 - 3403300
Alignment:
Q  275 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 352  Q
    |||||||||||||||||  |||||||||||||||||||| | || |||| ||||||||||||||||||||||||||||    
T  3403224 tttgtggtaattagtactaagtgacaagtttatgcaattatcatcactc-tttccaatggattgatatgtatcaggta 3403300  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 3401854 - 3401930
Alignment:
Q  275 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 352  Q
    |||||||||| || | | ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  3401854 tttgtggtaactaattctcagtgacaagtctatgcaattctcattactc-tttccaatggattgatatgtatcaggta 3401930  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 3369002 - 3369125
Alignment:
Q  19 ggtcacgtagctggtccaatggtggctgcaagtcttgtaactgtaagtacctgtgaaggaaactatatgtctataaaatcaaatggaatatttaaaggct 118  Q
    |||| ||||||||||||| |||||| |||||||| || | ||||||||||||| ||| | ||  ||| || |||||||||||||  |||||||| ||||     
T  3369002 ggtcgcgtagctggtccattggtggttgcaagtcctgcagctgtaagtacctgggaaaggaataataggtttataaaatcaaataaaatatttagaggc- 3369100  T
Q  119 aataatagcctaataagtttttgacat 145  Q
      |||||| |||||| |||||||||||    
T  3369101 --taatagtctaatatgtttttgacat 3369125  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 3377823 - 3377895
Alignment:
Q  198 aagtaaagttgatgatctagaaacatattttagtctcctgctaaagaaattggtacaatgtaacaaatgaatgc 271  Q
    |||||||||||||||||||| ||||| | ||||  ||||||||| ||||||||||| |||||||||||| ||||    
T  3377823 aagtaaagttgatgatctagtaacat-tattagggtcctgctaacgaaattggtactatgtaacaaatgtatgc 3377895  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 3403005 - 3403057
Alignment:
Q  19 ggtcacgtagctggtccaatggtggctgcaagtcttgtaactgtaagtacctg 71  Q
    |||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  3403005 ggtcgcgtagctggtccattggtggctgcaagtcctgtaaatgtaagtacctg 3403057  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 3377933 - 3378009
Alignment:
Q  275 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 352  Q
    |||||||||| || | | ||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||||||||    
T  3377933 tttgtggtaactaattctcagtgacaagtctatgcaattttcgttactcttt-ccagtggattgatatgtatcaggta 3378009  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 3369196 - 3369245
Alignment:
Q  345 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 394  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3369196 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3369245  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 3373740 - 3373796
Alignment:
Q  295 gtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 352  Q
    ||||||||||||   |||||| | |||||||| |||||||||||||||||||||||||    
T  3373740 gtgacaagtttactgaattctcagtactcttt-ccaatggattgatatgtatcaggta 3373796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 3394813 - 3394862
Alignment:
Q  345 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 394  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3394813 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3394862  T

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