View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_8 (Length: 449)
Name: NF20339_low_8
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 37507747 - 37507306
Alignment:
| Q |
1 |
ataagtcatttctggcctttgctcgtaacagtaacgcagcactcgcaaaggtatctcttgctcttaaaatcagtttgtatttttgcataactagtcattt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
37507747 |
ataagtcgtttctggcctttgctcgtaacagtaacgcagcactcgaaaaggtatctcttgctcttaaaatcagtttgtatttttgcatgaatagtcattt |
37507648 |
T |
|
| Q |
101 |
tggtctctaaatgtatgcaatagtgtcattgtagttcttaaattcatcaaaattacaaaaacatccacaagtgtatcttctgttagtaatttgatggacg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37507647 |
tggtctctaaatgtgtgcaatagtgtcattgtagttcttaaattcatcaaaattacaaaaacatcctcaagtgtatcttctgttagtaatttgatggacg |
37507548 |
T |
|
| Q |
201 |
aaattgagttatgaaaaacatgctcaagaatatttttgtattttttattaattcagtgactagggataacacacattcaaggaccaaaatggtcgtttac |
300 |
Q |
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| T |
37507547 |
aaattgagttatgaaaaacatgctcaagaatatttttgtattttttattaattcagtgactagggataacacacattcaaggaccaaaatggtcgtttac |
37507448 |
T |
|
| Q |
301 |
tctttattttttctttacatccgtgaaatctagtagggatattttttctttacatccaaaatgtttgttatgattccaaatattttaggcgtt-tatata |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
37507447 |
tctttattttttctttacatccgtgaaatctagtagggatattttttctttacatccaaaatgtttgtcatgattccaaatattttaggcgttatatata |
37507348 |
T |
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| Q |
400 |
tactaaaatcttttatattcttgtaggaagcatatgatgatg |
441 |
Q |
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| T |
37507347 |
tactaaaatcttttatattcttgtaggaagcatatgaggatg |
37507306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 3496103 - 3496028
Alignment:
| Q |
146 |
atcaaaattacaaaaacatccacaagtgtatcttctgttagtaatttgatggacgaaattgagttatgaaaaacat |
221 |
Q |
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| T |
3496103 |
atcaaaattataaaaacatctccaagtgtgtcttatgttagtaatttcatggaccaaattgattaatgaaagacat |
3496028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 27136565 - 27136507
Alignment:
| Q |
155 |
acaaaaacatccacaagtgtatcttctgttagtaatttgatggacgaaattgagttatg |
213 |
Q |
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| T |
27136565 |
acaaaaacatccttgagtgtatcttctactagtaatttgatggaccaaattgacttatg |
27136507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 10765509 - 10765562
Alignment:
| Q |
146 |
atcaaaattacaaaaacatccacaagtgtatc-ttctgttagtaatttgatgga |
198 |
Q |
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| T |
10765509 |
atcaaaattacaaaaacatcttcgagtgtatctttttgttagtaatttgatgga |
10765562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 29846233 - 29846189
Alignment:
| Q |
93 |
agtcattttggtctctaaatgtatgcaatagtgtcattgtagttc |
137 |
Q |
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| T |
29846233 |
agtcattttggtctctaaatgtgtgagatggtgtcattgtagttc |
29846189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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