View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20339_low_9 (Length: 391)
Name: NF20339_low_9
Description: NF20339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20339_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 3932484 - 3932101
Alignment:
| Q |
1 |
ctcaacccgttccatctctgctgggtcagctttccatcctctggatgctccaggaaatccaacacggaggattccatcctctgggtcaacacataatact |
100 |
Q |
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| T |
3932484 |
ctcaacccgttccatctctgctgggtcagctttccatcctctggatgctccaggaaatccaacacggaggattccatcctctgggtcaacacataatact |
3932385 |
T |
|
| Q |
101 |
gtcccagtgctgtcacgtgactgcccacgccaaccaaacctaaaagaaacaatgatcatagaagttaaaggcaaatgggtgaaagcacacaaggcccaat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
3932384 |
gtcccaatgctgtcacgtgactgcccacgccaaccaaacctaaaagaaacaatgatcatcgaagttaaaggcaaatgggtgaaagcacacaaggcccgat |
3932285 |
T |
|
| Q |
201 |
aaacaaaatttaacagaccagacataagttggcgtcctgtatataacttcttctgttcatttttagttgtaactaagannnnnnnacacataccaagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3932284 |
aaacaaaatttaacagaccagacataagttggcgtcctgtatataacttcttctgttcatttttagttgtaactaagatttttttacacataccaagaaa |
3932185 |
T |
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| Q |
301 |
atcaataaattatgttacttttgatagaactctttttcgataatatcattaactatttatcatgccactccacctattcatctc |
384 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3932184 |
atcaataaattatgttacttttgatagaactcttttttgataatatcattaactatttatcatgccactccacctatttatctc |
3932101 |
T |
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