View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2033_high_4 (Length: 295)
Name: NF2033_high_4
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 48054136 - 48053870
Alignment:
| Q |
13 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttctgtctgtgcttctgtttcttggggca |
112 |
Q |
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| T |
48054136 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttccgtctatgcttctgtttcttggggca |
48054037 |
T |
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| Q |
113 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48054036 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaag |
48053937 |
T |
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| Q |
213 |
aagtttatgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaat |
279 |
Q |
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| T |
48053936 |
aagtttacgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaat |
48053870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 29814061 - 29814198
Alignment:
| Q |
81 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatac |
180 |
Q |
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| T |
29814061 |
gatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatat |
29814160 |
T |
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| Q |
181 |
ttactgaaattggagcttcagtcaaagccaggaagttt |
218 |
Q |
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| T |
29814161 |
ttattgaaatcagggcttctgtcaaagccaagaagttt |
29814198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 29813958 - 29814007
Alignment:
| Q |
11 |
gtgagatgaataaatgcattagacagatcaaactatgcatcagaaaccac |
60 |
Q |
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| T |
29813958 |
gtgagataaataaatgcaataggaaaatcaaactatgcatcagaaaccac |
29814007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 48052797 - 48052744
Alignment:
| Q |
81 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaac |
134 |
Q |
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| T |
48052797 |
gatttctggctatgcttccatttcttggggcagggataatatctaggccttaac |
48052744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 48052727 - 48052671
Alignment:
| Q |
161 |
ttttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaggaagtt |
217 |
Q |
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| T |
48052727 |
ttttcttgttattgtcatatctactgaaattggggattctgtcaaggccaagaagtt |
48052671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 1173329 - 1173288
Alignment:
| Q |
19 |
aataaatgcattagacagatcaaactatgcatcagaaaccac |
60 |
Q |
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| T |
1173329 |
aataaatgcattaggcaaatcaaactatacatcagaaaccac |
1173288 |
T |
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