View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2033_high_5 (Length: 289)
Name: NF2033_high_5
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 42639097 - 42639366
Alignment:
| Q |
15 |
catcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42639097 |
catcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtctt |
42639196 |
T |
|
| Q |
115 |
gaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42639197 |
gaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagatagt |
42639296 |
T |
|
| Q |
215 |
tgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatctcagt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42639297 |
tgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagt |
42639366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 42634019 - 42634289
Alignment:
| Q |
17 |
tcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttgatgacaccgtgcacattattcatccaataccataatgctgtct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
42634019 |
tcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaataccataatgctgtct |
42634118 |
T |
|
| Q |
114 |
tgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaag |
213 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| || || |||||||||| | |
|
|
| T |
42634119 |
tgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtccgtaattaaagttccaagataa |
42634218 |
T |
|
| Q |
214 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatctcagt |
284 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||| |||||| |||| |
|
|
| T |
42634219 |
ttgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagt |
42634289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 42628498 - 42628551
Alignment:
| Q |
15 |
catcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42628498 |
catcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
127 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 42628651 - 42628694
Alignment:
| Q |
214 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatg |
257 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatg |
42628694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University