View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2033_high_7 (Length: 236)
Name: NF2033_high_7
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 6275158 - 6275373
Alignment:
| Q |
5 |
ccatgtcctgccagttccatctgaagtgtcggtgttatagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaa |
104 |
Q |
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| T |
6275158 |
ccatgtcctgccagttccatctgaagtgtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaa |
6275257 |
T |
|
| Q |
105 |
aagttttagatatctactcaacagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatca |
204 |
Q |
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| T |
6275258 |
aagttttagatatctactcaacagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatca |
6275357 |
T |
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| Q |
205 |
tgattcacagagtaac |
220 |
Q |
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|||||||||||||||| |
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| T |
6275358 |
tgattcacagagtaac |
6275373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 9822330 - 9822112
Alignment:
| Q |
1 |
atgtccatgtcctgccagttccatctgaagtgtcggtgttatagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822330 |
atgtccatgtcctgccagttccatctgaagtgtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaata |
9822231 |
T |
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| Q |
101 |
ttaaaagttttagatatctactcaacagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaat |
200 |
Q |
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| T |
9822230 |
ttaaaagttttagatatctactcaatagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaat |
9822131 |
T |
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| Q |
201 |
atcatgattcacagagtaa |
219 |
Q |
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||||||||||||||||||| |
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| T |
9822130 |
atcatgattcacagagtaa |
9822112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 35679287 - 35679113
Alignment:
| Q |
28 |
aagtgtcggtgttatagtgatttatattcaaca---ttcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactca |
124 |
Q |
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||||||||||| ||||||||||| ||||||||| |||| || |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
35679287 |
aagtgtcggtgctatagtgatttctattcaacaacattcaagctatggttctaaattgcaatcaacaacagcaatat-aaattttttagatatctactca |
35679189 |
T |
|
| Q |
125 |
acagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaat |
200 |
Q |
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|| |||||| | || | |||||||| ||||||||||||| |||||||||||||||| | |||||| |||||||||| |
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| T |
35679188 |
acggcattgtaactacagtctcatctgccacaatttgccgcaatatcatgattcaaagggtaaccgtgaccgcaat |
35679113 |
T |
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