View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2033_low_1 (Length: 581)
Name: NF2033_low_1
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_low_1 |
 | |
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| [»] scaffold0417 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 27426102 - 27425526
Alignment:
| Q |
1 |
cttaagtaacaagataaacaagctcagaacatcctcgtaagaaagaacttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426102 |
cttaagtaacaagataaacaagctcagaacatcctcgtaagaaagaacttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgt |
27426003 |
T |
|
| Q |
101 |
ttcaccaactgcacctaaaccagacccggctgcgggcccatctattaaagaactcattcccataggtgcaaatgctaaaccaaccccgttcttcgaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426002 |
ttcaccaactgcacctaaaccagacccggctgcaggcccatctattaaagaactcattcccataggtgcaaatgctaaaccaaccccgttcttcgaaaca |
27425903 |
T |
|
| Q |
201 |
acatcattgaaacgctttctaggaacagcctgaaacaatatttgacagcacctcatgttataatttcttaacatgtataaacatnnnnnnn--tctttaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27425902 |
acatcattgaaacgctttctaggaacagcctgaaacaaaatttgacagcacctcatgttataatttcttaacatgtataaacataaaaaaaaatctttaa |
27425803 |
T |
|
| Q |
299 |
atgaatgaataatgaactgacataaacatgatagaggaaactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaaca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27425802 |
atgaatgaataatgaactgacataaacatgatagaggaaactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaaca |
27425703 |
T |
|
| Q |
399 |
tcagtctctaaatcgtcatcaatcacatttagttgtaaattattatctgaattaatattactgttagcaagattaatcttatagaaatgaattgaatttc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27425702 |
tcagtctctaaatcgtcatcaatcacatttagttgtagattattatctgaattaatattactgttagcaagattaatcttatagaaatgaattgaatttc |
27425603 |
T |
|
| Q |
499 |
ttgcaaggatgtcttttgaagcttccacggcctcagtaacggtgagatcaccatcaaggcatgaatcacgtagaacg |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27425602 |
ttgcaaggatgtcttttgaagcttccacggcctcagtaacggtgagatcaccatcaaggcatgaatcacgtagaacg |
27425526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 302 - 575
Target Start/End: Complemental strand, 27404948 - 27404675
Alignment:
| Q |
302 |
aatgaataatgaactgacataaacatgatagaggaaactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaacatca |
401 |
Q |
| |
|
||||| ||||||| ||| | ||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
27404948 |
aatgactaatgaagtgagagaaacaggatagtggaaactcacacgacatctgtgctgtcccgagttatcaacccacattatacgaataaatgaaacatca |
27404849 |
T |
|
| Q |
402 |
gtctctaaatcgtcatcaatcacatttagttgtaaattattatctgaattaatattactgttagcaagattaatcttatagaaatgaattgaatttcttg |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27404848 |
gtctctaaatcgtcatcaatcacatttagttgtaaattattatctgaactaataacactgttagcaagattaatcttatagaaatgaattgaatttcttg |
27404749 |
T |
|
| Q |
502 |
caaggatgtcttttgaagcttccacggcctcagtaacggtgagatcaccatcaaggcatgaatcacgtagaacg |
575 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||| | ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
27404748 |
caaggatgccttttgcagcttccacagcctcgggaacagtgagatcaccatcaaggcatgaatcacgcagaacg |
27404675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 27405242 - 27404987
Alignment:
| Q |
1 |
cttaagtaacaagataaacaagctcagaacatcctcgtaagaaagaacttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
27405242 |
cttaagtaacaagataaacaagctcagaacgtcctcgtaagagagaacttgtgtaccaaggaatcctccttttagtagacaaatcaggtgttaatcttgt |
27405143 |
T |
|
| Q |
101 |
ttcaccaactgcacctaaaccagacccggctgcgggcccatctattaaagaactcattcccataggtgcaaatgctaaaccaaccccgttcttcgaaaca |
200 |
Q |
| |
|
||| |||||||||||||| || ||||| ||||| || ||||||| ||||| |||||||||||| ||||| ||||||||||| || |||||||||||| |
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|
| T |
27405142 |
ttctccaactgcacctaaccctgacccagctgcaggtccatctaaaaaagaggtcattcccatagtcgcaaaagctaaaccaacgccattcttcgaaaca |
27405043 |
T |
|
| Q |
201 |
acatcattgaaacgctttctaggaacagcctgaaacaatatttgacagcacctcat |
256 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
27405042 |
aaatcattgaaacgcttcctaggaacagcctgaaacaaaattcgacagcacctcat |
27404987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 27254300 - 27254496
Alignment:
| Q |
39 |
aagaaagaacttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgtttcaccaactgcacctaaaccagacccggctgcgggcc |
138 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||||||||| || ||||| |||||||||| ||||||||| |||||||||||| | | ||| | |
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|
| T |
27254300 |
aagaaggaacatgtgtaccaaggaattttccttttagtagataaatcaggtgttaatcttgcttcaccaacataacctaaaccagaatcaggtgcaagtt |
27254399 |
T |
|
| Q |
139 |
catctattaaagaactcattcccataggtgcaaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaa |
235 |
Q |
| |
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||| | | |||| ||| | |||||| |||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
27254400 |
tatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
27254496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 27294423 - 27294506
Alignment:
| Q |
39 |
aagaaagaacttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgtttcaccaactgcacctaaacca |
122 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||||||||| || ||||| |||||||||| ||||||||| |||||||||| |
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|
| T |
27294423 |
aagaaggaacatgtgtaccaaggaattgtccttttagtagataaatcaggtgttaatcttgcttcaccaacataacctaaacca |
27294506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 27294565 - 27294618
Alignment:
| Q |
181 |
caaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaa |
234 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
27294565 |
caaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaa |
27294618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 27294672 - 27294771
Alignment:
| Q |
297 |
aaatgaatgaataatgaactgacataaacatgatagagg-aaactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaa |
395 |
Q |
| |
|
|||| ||| ||||||||| ||||| |||| || |||||| ||||||||||||||||| |||||||| || | |||||| |||||||||||||||||| |
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|
| T |
27294672 |
aaataaataaataatgaagtgacagaaacttggtagagggaaactcacacgacatctatgttgtcctaaaaagttaacccaaattatacgaacaaatgaa |
27294771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 27254583 - 27254645
Alignment:
| Q |
337 |
aactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaacat |
399 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||| |||||||||||||||||||||| |
|
|
| T |
27254583 |
aactcacacgacatctgtgttgtcctacaaaattaacccaaattatacgaacaaatgaaacat |
27254645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 49 - 255
Target Start/End: Original strand, 12715 - 12921
Alignment:
| Q |
49 |
ttgtgtaccaaggaatcctccttttagtagacaagtcaggcgttaatcttgtttcaccaactgcacctaaaccagacccggctgcgggcccatctattaa |
148 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| || ||||| |||||||||| ||||||||||| |||||||||||| || |||| | ||||| | || |
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|
| T |
12715 |
ttgtataccaaggaattgtccttttagtagataaatcaggtgttaatcttgcttcaccaactgaacctaaaccagaaccagctggagatccatccaaaaa |
12814 |
T |
|
| Q |
149 |
agaactcattcccataggtgcaaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaacaatatttgacag |
248 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||| || ||||| | ||||||||||| ||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
12815 |
agaagtcattaccatactcacaaatgctaaaccaacaccattcttagtaacaacatcatagaaacgctttctaggaatagcctgaaacaaaatttcacag |
12914 |
T |
|
| Q |
249 |
cacctca |
255 |
Q |
| |
|
||||||| |
|
|
| T |
12915 |
cacctca |
12921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 12983 - 13055
Alignment:
| Q |
337 |
aactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaacatcagtctctaa |
409 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
12983 |
aactcacacgacatctgtgttgtcctgaattatcaacccataatatacgaacaaatgaaacatcagtgtctaa |
13055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 20473462 - 20473593
Alignment:
| Q |
40 |
agaaagaacttgtgtaccaaggaatcctccttttagtagacaag-tcaggcgttaatcttgtttcaccaactgcacctaaaccagacccggctgcgggcc |
138 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
20473462 |
agaaagaacttttctaccaaagaatcctccttttagtagacaaaatcaggccttaatcttgtttcaccaactgcacctaaaccagacccagctgcatgtc |
20473561 |
T |
|
| Q |
139 |
catctattaaagaactcattcccataggtgca |
170 |
Q |
| |
|
||| || |||||| |||||||||||| |||| |
|
|
| T |
20473562 |
aatccataaaagaagtcattcccatagttgca |
20473593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 13353899 - 13353833
Alignment:
| Q |
333 |
aggaaactcacacgacatctgtgttgtcccgaattatcaacccatattatacgaacaaatgaaacat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
13353899 |
aggaaactcacacgacatctgtgttgtcctgaaatattaacccataatatacgaacaaatgaaacat |
13353833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 13354409 - 13354331
Alignment:
| Q |
169 |
caaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaacaatatttgaca |
247 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||| |||| |||||||||||| |||||||||||| || ||||| |
|
|
| T |
13354409 |
caaatgctaaaccaatcccattcttcttaacaacatcatagaaatgctttctaggaatagcctgaaacaaaatatgaca |
13354331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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