View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2033_low_10 (Length: 207)

Name: NF2033_low_10
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2033_low_10
NF2033_low_10
[»] chr4 (4 HSPs)
chr4 (15-190)||(48912289-48912464)
chr4 (38-187)||(48958207-48958356)
chr4 (39-187)||(48961356-48961504)
chr4 (38-187)||(48965392-48965538)
[»] scaffold0536 (2 HSPs)
scaffold0536 (38-190)||(6478-6630)
scaffold0536 (11-190)||(10433-10612)
[»] chr2 (2 HSPs)
chr2 (39-187)||(13448426-13448571)
chr2 (39-187)||(13454897-13455042)
[»] chr6 (2 HSPs)
chr6 (42-190)||(12590140-12590291)
chr6 (120-192)||(12483516-12483588)
[»] chr5 (1 HSPs)
chr5 (38-182)||(12540753-12540894)
[»] chr7 (1 HSPs)
chr7 (39-187)||(3417498-3417643)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 48912289 - 48912464
Alignment:
Q  15 aagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattatta 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912289 aagaaacggacggagaatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattatta 48912388  T
Q  115 agggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912389 agggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 48912464  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 48958356 - 48958207
Alignment:
Q  38 tgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatg 137  Q
    |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||||||| | | |||| |||| ||| ||||| ||||| ||| ||    
T  48958356 tgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttg 48958257  T
Q  138 attctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  48958256 attctgagccacattgccgtgggtgcatttatgacacattgcgggtggaa 48958207  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 48961504 - 48961356
Alignment:
Q  39 gaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatga 138  Q
    |||||||||||||| || |||||||| || || |||||||||||||  || | ||||||||||| | |||| |||||||| ||||| ||||| |||||||    
T  48961504 gaagaggagaaagacaagtggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatga 48961405  T
Q  139 ttctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    | ||| |||||||||| |||||||  |||||||| ||||| ||||||||    
T  48961404 tcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaa 48961356  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 48965538 - 48965392
Alignment:
Q  38 tgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatg 137  Q
    ||||||||||||  |||| ||||| |||||||| || ||||||||||  || |||||||||   | | ||||||||| |||||||||||| |||||| ||    
T  48965538 tgaagaggagaagcaaaagtggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctg 48965442  T
Q  138 attctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    |||||||||||| | || |||||||| |||||||| |||||||| |||||    
T  48965441 attctgagccaccccgctgtgggtgcctttatgactcattgtggttggaa 48965392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 6478 - 6630
Alignment:
Q  38 tgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatg 137  Q
    |||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||    
T  6478 tgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatg 6577  T
Q  138 attctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 190  Q
    ||| ||||||||| |||  ||||||| |||||||| |||||||||||||||||    
T  6578 attttgagccacaaagctctgggtgcgtttatgacgcattgtgggtggaattc 6630  T

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Target: scaffold0536; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 10433 - 10612
Alignment:
Q  11 tgagaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgatt 110  Q
    |||||||||| |||  ||| |||| | | |||||||||||||||||||| | || || || |||||||| ||| |||| | ||||||||||| | |||||    
T  10433 tgagaagaaagggaaagagaatgagagtcaagaggagaaagaaaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttgatt 10532  T
Q  111 attaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 190  Q
    |||||||||||||| || |||||||||||||| |||||||| |  |||||||| ||||||||||||||||||||||||||    
T  10533 attaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattc 10612  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 13448571 - 13448426
Alignment:
Q  39 gaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatga 138  Q
    ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||| ||    
T  13448571 gaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggttaaga 13448475  T
Q  139 ttctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    |  |||||||| | || ||||| | ||||||||| ||||| ||| ||||    
T  13448474 tattgagccaccctgcagtggggggatttatgacgcattgcggggggaa 13448426  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 13455042 - 13454897
Alignment:
Q  39 gaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatga 138  Q
    |||||||||||| |||| |||||||| ||||| |||||||||| ||  ||||   |||| |||| | |||| |||| ||||||||| ||||| |||| ||    
T  13455042 gaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacatcg---agaaaaagggtttgatcattaggggttgggccccacaagttaaga 13454946  T
Q  139 ttctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    |  |||| ||| | || ||||| | ||||||||| ||||| ||| ||||    
T  13454945 tattgagtcaccctgcagtggggggatttatgacgcattgcggggggaa 13454897  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 12590140 - 12590291
Alignment:
Q  42 gaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcgg---aaagaagaaggctatgattattaagggttgggctccacaggttatga 138  Q
    ||||| ||| ||||||||||||| |  || |||||||||||||  || ||   ||||||||||| | |||| |||| ||||||||| ||||| || ||||    
T  12590140 gaggataaacaaaaatggttgcctagtggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccacaagtaatga 12590239  T
Q  139 ttctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 190  Q
    || |||||||||  || ||||| || ||||||||||||||||| ||||||||    
T  12590240 ttatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattc 12590291  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 12483516 - 12483588
Alignment:
Q  120 tgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattctg 192  Q
    ||||| ||||||||  ||||| |||||||| | || ||||||||||||||||| || ||||| ||||||||||    
T  12483516 tgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctg 12483588  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 12540894 - 12540753
Alignment:
Q  38 tgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatg 137  Q
    |||||| ||||||||||| ||| |||| ||||| ||||| |||||||  || ||||| |||   | | |||| |||| ||||||||| |||||||||| |    
T  12540894 tgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaag 12540798  T
Q  138 attctgagccacacagccgtgggtgcatttatgacacattgtggg 182  Q
    ||  |||||||| | || ||||| | |||||||||||||||||||    
T  12540797 atattgagccaccctgcggtggggggatttatgacacattgtggg 12540753  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 3417498 - 3417643
Alignment:
Q  39 gaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatga 138  Q
    ||||| ||||||||||| |||||||| ||||| ||||| |||||||  || |||||||||   | | ||||  ||| ||||||||| |||||||||  ||    
T  3417498 gaagaagagaaagaaaagtggttgccgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcaga 3417594  T
Q  139 ttctgagccacacagccgtgggtgcatttatgacacattgtgggtggaa 187  Q
    |  |||||||| | || || || | ||||||||||||||||||| ||||    
T  3417595 tattgagccaccctgcggtagggggatttatgacacattgtggggggaa 3417643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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