View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2033_low_2 (Length: 539)
Name: NF2033_low_2
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 44279717 - 44279189
Alignment:
| Q |
1 |
aacttgctctaacatcattcttttatgttgatcaagagggctctctggattatcagagtgaacaatgtttagaaaatatatcttctttgaggcaacaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44279717 |
aacttgctctaacatcattcttttatgttgatcaagagggctctctggattatcagagtgaacaatatttagaaaatatatcttctttgaggcaacaaat |
44279618 |
T |
|
| Q |
101 |
gctgcagaaaagatcctcttcagccctcccctagtactatcaatcttgtattcaaattcataaacttgcaaacctcccttccccgatctttctgcaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279617 |
gctgcagaaaagatcctcttcagccctcccctagtactatcaatcttgtattcaaattcataaacttgcaaacctcccttccccgatctttctgcaactg |
44279518 |
T |
|
| Q |
201 |
tgaccacctcggcttccttcgtactttcctgaacatggaggcaataactaacagaagttaaaactaaattaaatttgatacacaatcacatagatataag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||| |||| |
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| T |
44279517 |
tgaccacctcggcttccttcgtactttcctgaacatggaggcaataactgacagaagttaaagataaattaaatttgatacacagtcacttagatgtaag |
44279418 |
T |
|
| Q |
301 |
gcatgcttatcaatccaccatttcttaacacacaaaaacatgtaggactatatgcaaattaggtagagtttgggacaaatagaccttctcgtgtttccta |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||| |
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| T |
44279417 |
gcatgcttatcaatccaccatttcttaaaacacaaaaacatgtaggactatatgcaaatgaggtaaagtttgggacagacagaccttctcgtgtttccta |
44279318 |
T |
|
| Q |
401 |
ttcttacttctcaacctcagtattaaatgctataaga-----atactattataaaatgaaatggtcattttttggtcataaaagcagcagcagtgtttcc |
495 |
Q |
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||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279317 |
ttcttacttctcaacctcaatattaaatgctttaagattattatactattataaaatgaaatggtcattttttggtcataaaagcagcagcagtgtttcc |
44279218 |
T |
|
| Q |
496 |
tt-aaactaagtacagaatacctactttt |
523 |
Q |
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|| ||||||||||||||| ||||||||| |
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| T |
44279217 |
ttaaaactaagtacagaactcctactttt |
44279189 |
T |
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