View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2033_low_9 (Length: 228)
Name: NF2033_low_9
Description: NF2033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2033_low_9 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 27426215 - 27426414
Alignment:
| Q |
26 |
atagtttttaaactaatgcaactctattccatccattataggagcaaggaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatggg |
125 |
Q |
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| T |
27426215 |
atagtttttaaactaatgcaactctattccatccattataggagcaaggaagatgaaatggttttaggcgatctgaatgttaaaccttgccaagcatggg |
27426314 |
T |
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| Q |
126 |
agtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttgcatagcttgtcttatttataattacctatg |
225 |
Q |
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| T |
27426315 |
agtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttgcatagcttgtcttatttataattacctatg |
27426414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 27405317 - 27405484
Alignment:
| Q |
45 |
aactctattccatccattataggagcaaggaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggc |
144 |
Q |
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| T |
27405317 |
aactctgttccatacattataggagcaaggaagatgaaatggttttaggtgatctaaatgttaaacctggccaagcatgggagtattgcccaagagacgc |
27405416 |
T |
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| Q |
145 |
cttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttgcatagcttgtcttattt |
212 |
Q |
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| T |
27405417 |
cttaagaagagtttccaaaattctgaaagatgaatttaacttggtatgttgcatagcttgtcttattt |
27405484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 27254204 - 27254087
Alignment:
| Q |
77 |
gatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
176 |
Q |
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| T |
27254204 |
gatgaaatggttttaggggatctcaatgttaaacctggtcaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaagatg |
27254105 |
T |
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| Q |
177 |
aatttgacttggtatgtt |
194 |
Q |
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| T |
27254104 |
aatttgacttggtatgtt |
27254087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 27294347 - 27294210
Alignment:
| Q |
57 |
tccattataggagcaaggaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagt |
156 |
Q |
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| T |
27294347 |
tccattataggtgcaaacaagatgaaatggttttaggggatctcaacgttaaacctggtcaagcatgggaacaatgcccgagagaggccttaagaaaagt |
27294248 |
T |
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| Q |
157 |
ttccaaaattctcaaagatgaatttgacttggtatgtt |
194 |
Q |
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| T |
27294247 |
ttccaaaattctcaaagatgaatttgacttggtatgtt |
27294210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 12620 - 12483
Alignment:
| Q |
60 |
attataggagcaaggaagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttc |
159 |
Q |
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| T |
12620 |
attataggagcaagcaagatgaaattgttttaggtgatttgaatctacaacctggtcaagcatgggaatattgcccaagagaggccttaagaagagtctc |
12521 |
T |
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| Q |
160 |
caaaattctcaaagatgaatttgacttggtatgttgca |
197 |
Q |
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| T |
12520 |
caaaattctcaaagatgaatttgacttggtatggtgca |
12483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 13354815 - 13354940
Alignment:
| Q |
75 |
aagatgaaatggttttaggcgatctgaatgttaaacctggccaagcatgggagtattgcccaagagaggccttaagaagagtttccaaaattctcaaaga |
174 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
13354815 |
aagatgaaatggttttaggtgatctgaatgttaaacctggtcaagcttgggaatattgcccaagagaagcctttagaagagttaccaaaattctcaaaga |
13354914 |
T |
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| Q |
175 |
tgaatttgacttggtatgttgcatag |
200 |
Q |
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| T |
13354915 |
tgaatttgacttggtatgctgcatag |
13354940 |
T |
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