View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_high_11 (Length: 411)
Name: NF20340_high_11
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 33381102 - 33381482
Alignment:
| Q |
18 |
atattctccactctcttgccatgtaataatgaaaaacttaaatgtaagctatatgtgtgtgtatatgttccacgtatgctttatcatcggaaattcgacc |
117 |
Q |
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| T |
33381102 |
atattctccactctcttgccatgtaataatgaaaaacttaaatgtaagctatatgtgtgtgtatatgttccacgtatgctttatcatcggaaattcgacc |
33381201 |
T |
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| Q |
118 |
attgctcgcaaaggatatcaatattttcacatgtcttgtctgttaagaaaaaatgaattgattaaaatagctaataccttgtactttagatagggaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381202 |
attgctcgcaaaggatatcaatattttcacatgtcttgtctgttaagaaaaaatgaattgattaaaatagctaataccttgtactttagatagggaaaat |
33381301 |
T |
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| Q |
218 |
ggatttgtctgctataaatgtttcactctagaatagatattttatataccaataattgaacttcttttccctgtcggaaatattaatagaaaaaagatat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |
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| T |
33381302 |
ggatttgtctgctataaatgtttcactctagaatagatattttatataccaataattgaactttgtctccctgtcggaaatattaatagaaaaaagatct |
33381401 |
T |
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| Q |
318 |
tggataattaagaaagatagaagaaagttgttataccatggtaaaatatcactatttttaatgcaaattttggatggacct |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381402 |
tggataattaagaaagatagaagaaagttgttataccatggtaaaatatcactatttttaatgcaaattttggatggacct |
33381482 |
T |
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