View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20340_high_17 (Length: 322)

Name: NF20340_high_17
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20340_high_17
NF20340_high_17
[»] chr5 (4 HSPs)
chr5 (14-144)||(1354454-1354579)
chr5 (208-307)||(1354292-1354391)
chr5 (208-286)||(19692787-19692865)
chr5 (208-256)||(5356293-5356341)
[»] chr2 (6 HSPs)
chr2 (208-283)||(8773643-8773716)
chr2 (208-283)||(8789919-8789992)
chr2 (208-286)||(44941046-44941124)
chr2 (208-286)||(34546233-34546311)
chr2 (208-289)||(18052980-18053060)
chr2 (208-253)||(42945012-42945057)
[»] chr3 (3 HSPs)
chr3 (207-259)||(27968260-27968312)
chr3 (208-257)||(52340115-52340164)
chr3 (208-286)||(34758992-34759069)
[»] chr7 (5 HSPs)
chr7 (208-254)||(46684553-46684599)
chr7 (208-287)||(8170094-8170173)
chr7 (207-254)||(15034795-15034842)
chr7 (209-261)||(43670475-43670527)
chr7 (210-282)||(47305496-47305567)
[»] chr8 (1 HSPs)
chr8 (208-284)||(31206373-31206449)
[»] chr1 (4 HSPs)
chr1 (211-254)||(50974571-50974614)
chr1 (208-286)||(40377105-40377182)
chr1 (209-285)||(44719245-44719320)
chr1 (203-247)||(45584597-45584641)
[»] chr4 (2 HSPs)
chr4 (208-262)||(49144826-49144880)
chr4 (208-254)||(49446590-49446636)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 1354579 - 1354454
Alignment:
Q  14 attatactgcaaatgtagcaatcatacctagataggaatactatactctgcatagcaaatcacaagaggatataaatacccaattttcgtaaactcaata 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1354579 attattctgcaaatgtagcaatcatacctagataggaatactatactctgcatagcaaatcacaagaggatataaatacccaattttcgtaaactcaa-- 1354482  T
Q  114 tgtcctattaacaagtgcctccgagacactc 144  Q
       | | ||||||||||||||||||||||||    
T  1354481 ---cttgttaacaagtgcctccgagacactc 1354454  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 1354391 - 1354292
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcccaaacttaattggtgtggtttt 307  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  1354391 ttgattatatatattttcatgataatttaccttttaaaggccttaaccaatgccctcggagcaccggttaacatttcccaaacttaattgatgtggtttt 1354292  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 19692787 - 19692865
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 286  Q
    ||||||||| ||| ||| ||||||| ||||  ||||||||||||||||| ||||  |||  ||||||||||||||||||    
T  19692787 ttgattacacataatttgatgataagttacaatttaaaggccttaaccagtgcccccgggacactggttaacatttccc 19692865  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 5356341 - 5356293
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaacca 256  Q
    ||||||||| ||||||||||||||| ||||| ||||||| |||||||||    
T  5356341 ttgattacacatattttcatgataagttaccatttaaagaccttaacca 5356293  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 8773716 - 8773643
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacattt 283  Q
    ||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  8773716 ttgattacatatattttcatgttaagttaccctttaaagaccttaaccaatgcc-tcgga-cactggttaacattt 8773643  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 8789919 - 8789992
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacattt 283  Q
    ||||||||| ||||||||||| ||| ||||| ||||||| ||||||||| |||| ||||| |||||||||||||||    
T  8789919 ttgattacacatattttcatgttaagttaccctttaaagaccttaaccagtgcc-tcgga-cactggttaacattt 8789992  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 44941124 - 44941046
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcgga-gcactggttaacatttccc 286  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||| | || ||||||| | | |||||||||||||||    
T  44941124 ttgattacatatattttcctgataaattaccatttaaaggccttaactagtg-cttcggaggtattggttaacatttccc 44941046  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 34546311 - 34546233
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 286  Q
    ||||||||| | ||||||||||||| ||| | ||||| || ||||||||||||| |||  ||||| |||||||||||||    
T  34546311 ttgattacacacattttcatgataagttatcatttaatggtcttaaccaatgccctcgaggcactagttaacatttccc 34546233  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 18053060 - 18052980
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcccaaa 289  Q
    ||||||| | ||| ||||||||||| |||||||| |||||||||||| ||||||   ||  ||||||||||||||| |||||    
T  18053060 ttgattatacatactttcatgataaattaccttt-aaaggccttaactaatgccccggggacactggttaacattttccaaa 18052980  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 42945057 - 42945012
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaa 253  Q
    ||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  42945057 ttgattacacatatttttatgataatttactatttaaaggccttaa 42945012  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 27968260 - 27968312
Alignment:
Q  207 tttgattacatatattttcatgataatttaccttttaaaggccttaaccaatg 259  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  27968260 tttgattacacatattttcatgataagttaccatttaaaggccttaaccaatg 27968312  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 52340164 - 52340115
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaa 257  Q
    ||||||||| ||||||| ||||||| ||||| ||||||||||||||||||    
T  52340164 ttgattacacatatttttatgataagttaccatttaaaggccttaaccaa 52340115  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 34758992 - 34759069
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 286  Q
    |||||||||||||||| |||||||| ||||  ||||||| ||||||| | ||||  ||| |||| ||||||||||||||    
T  34758992 ttgattacatatatttccatgataagttactatttaaagcccttaactagtgcc-ccggtgcaccggttaacatttccc 34759069  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 46684599 - 46684553
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaac 254  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  46684599 ttgattacatatattttcatgataaattaccatttaaaggccttaac 46684553  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 8170094 - 8170173
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccca 287  Q
    ||||||| | |||| |||||||||| |||| |||||||| ||||||| | ||||   || ||||||||||||||||||||    
T  8170094 ttgattatacatatgttcatgataagttactttttaaagaccttaactagtgccccaggggcactggttaacatttccca 8170173  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 15034842 - 15034795
Alignment:
Q  207 tttgattacatatattttcatgataatttaccttttaaaggccttaac 254  Q
    ||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  15034842 tttgattacacgtattttcataataagttaccttttaaaggccttaac 15034795  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 43670475 - 43670527
Alignment:
Q  209 tgattacatatattttcatgataatttaccttttaaaggccttaaccaatgcc 261  Q
    ||||||||||| |||| ||||||| ||||| ||||||| |||| |||||||||    
T  43670475 tgattacatatgtttttatgataaattaccatttaaagaccttcaccaatgcc 43670527  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 47305567 - 47305496
Alignment:
Q  210 gattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatt 282  Q
    ||||||| ||||||||||||||| ||||| ||||||  ||||||| | ||||  |||||||| ||||||||||    
T  47305567 gattacacatattttcatgataagttaccatttaaacaccttaactagtgcc-ccggagcaccggttaacatt 47305496  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 31206373 - 31206449
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttc 284  Q
    ||||||||| ||||||| ||||||| ||||  ||||||||||||||| ||||||   ||||||||  ||||||||||    
T  31206373 ttgattacacatatttttatgataaattactatttaaaggccttaactaatgccccgggagcactaattaacatttc 31206449  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 50974614 - 50974571
Alignment:
Q  211 attacatatattttcatgataatttaccttttaaaggccttaac 254  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  50974614 attacatatattttcatgataaattaccatttaaaggtcttaac 50974571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 40377105 - 40377182
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttccc 286  Q
    ||||||||| |  |||||||||||| ||||| ||||||||||||||| | |||| | || ||||| |||||||||||||    
T  40377105 ttgattacacaacttttcatgataaattaccatttaaaggccttaactagtgccct-ggggcactcgttaacatttccc 40377182  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 44719245 - 44719320
Alignment:
Q  209 tgattacatatattttcatgataatttaccttttaaaggccttaaccaatgccttcggagcactggttaacatttcc 285  Q
    |||||||| | ||||||||||||| ||||| |||||||  |||||| | |||| |||| ||| ||||||||||||||    
T  44719245 tgattacacacattttcatgataaattaccatttaaagctcttaactagtgcc-tcggggcagtggttaacatttcc 44719320  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 45584597 - 45584641
Alignment:
Q  203 atgttttgattacatatattttcatgataatttaccttttaaagg 247  Q
    |||| ||||||||| ||||||||||||||| |||| |||||||||    
T  45584597 atgtattgattacacatattttcatgataagttactttttaaagg 45584641  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 49144826 - 49144880
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaaccaatgcct 262  Q
    ||||||||||||||||| |||| || ||||| ||||||| | |||||||||||||    
T  49144826 ttgattacatatatttttatgaaaaattaccatttaaagactttaaccaatgcct 49144880  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 49446636 - 49446590
Alignment:
Q  208 ttgattacatatattttcatgataatttaccttttaaaggccttaac 254  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||||    
T  49446636 ttgattacacatattttcatgataagttactatttaaaggccttaac 49446590  T

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