View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20340_high_18 (Length: 317)
Name: NF20340_high_18
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 124 - 300
Target Start/End: Complemental strand, 44817409 - 44817247
Alignment:
| Q |
124 |
ttttatgcaactttttacgtggaaatcaaaaagcaatgttgaatatatatattttgtactctcatagtgaagaatgcttgccatttacagctgagtgaag |
223 |
Q |
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| T |
44817409 |
ttttatgcaactttttacgtggaaatcaaaaagcaatgttgaatatat----tttgtactctcatagtgaagaatgcttgccatttacagctgagtg--- |
44817317 |
T |
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| Q |
224 |
aagaagactgaagcaaggaaatcgaggaatgatactattttaaattatcttatatatggtctaaatctccttctaat |
300 |
Q |
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| T |
44817316 |
---aagactgaagcaaggaaatcgaggaatgatactattttaaattatct----tatggtctaaatctccttctaat |
44817247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 44817667 - 44817539
Alignment:
| Q |
1 |
gttaggtttggttgcaatccaatccaacaaccactttgtccaggcttgttaagtgcctgtacaaaaaaggggccctctacatgcaaacatgtgtcatctc |
100 |
Q |
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| T |
44817667 |
gttaggtttggttgcaatccaatccaacacccactttgtccaggcttgttaagtgacagtacaaaaaaggggccctctacatgcaaacatgtgtcatctc |
44817568 |
T |
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| Q |
101 |
gtgcttcatatatatcaatttcattttat |
129 |
Q |
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| T |
44817567 |
gtgcttcatatatatcaatttcattttat |
44817539 |
T |
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