View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20340_high_27 (Length: 275)
Name: NF20340_high_27
Description: NF20340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20340_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 43451883 - 43451620
Alignment:
| Q |
1 |
caatcatcccatcaacagtggcctgtgttatgacactattaggagaagttgaaggtatttctgtcttcactactgactcgctatctttgtatggacactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43451883 |
caatcatcccatcaacagtggcctgtgttatgacactattaggagaagttgaaggtatttctgtcttcactactgactcgctatctttgtatggacactc |
43451784 |
T |
|
| Q |
101 |
acatgtaggtgggactgaactggggttgtgttctttccagctagcaactagtcttttgagcacataatttgtctttggtagcttggtgttttgtagcttc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43451783 |
acatgtaggcgggactgaactggggttgtgttctttccagctagcaactagtcttttgagcacataatttgtctttggtagcttggtgttttgtagcttc |
43451684 |
T |
|
| Q |
201 |
tggcgagtgataggacaagttatgttctctctattaaaccattcctcaatagctttacgttcat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43451683 |
tggcgagtgataggacaagttatgttctctctattaaaccattcctcaatagctttacgttcat |
43451620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University